rpsE GENE
rpsE
Gene type: protein
organism=Escherichia coli str. K-12 substr. MG1655
Gene - Raw genomic sequence with all regulatory regions
β 168 codons, 168 functional, 120 bonds
Pattern Distribution:
Pattern 3 (Structural (Simple)): 14 (8.3%)
Pattern 5 (Flow (Bonding)): 24 (14.3%)
Pattern 20 (Complex (Coordination)): 68 (40.5%)
Pattern 201 (Spiral Threaders (ΟΒΉ Harmonics)): 11 (6.5%)
Pattern 202 (Pentagon Ricochets (ΟΒ² Harmonics)): 15 (8.9%)
Pattern 203 (Fibonacci Pilers (ΟΒ³ Harmonics)): 7 (4.2%)
Pattern 204 (Golden Harmonic Resonators (Οβ΄ Harmonics)): 18 (10.7%)
Pattern 205 (Geometric Controllers (Οβ Harmonics)): 11 (6.5%)
Junk 66 (DNA's Highway - navigating, timing, scaling, control): 0 (0.0%)rpsE - 30S ribosomal subunit protein S5
BETA
Escherichia coli str. K-12 substr. MG1655
Gene name
30S ribosomal subunit protein S5
Symbol
rpsE
Gene ID
947795
Locus tag
b3303
Organism
Escherichia coli str. K-12 substr. MG1655
Gene type
protein-coding
Synonym
ECK3290, eps, spc, spcA
Proteins
1
Refseq summary
The S5 protein is a component of the 30S subunit of the ribosome. [More information is available at EcoCyc: EG10904].RpsE shows a different strategy - The Precision Specialist! π―β‘
The βAccuracy Guardianβ Signature:
While NCBIβs description is brief, the cosmic programming reveals RpsEβs true nature:
π΅ Harmonic Precision Focus:
- 10.7% Pattern 204 (Golden Harmonic Resonators) - Highest harmonic percentage yet!
- 14.3% Pattern 5 (Flow/Bonding) - Enhanced flow for accuracy sensing
- Function: HARMONIC TUNER - Specialized for frequency precision
β‘ Minimal But Strategic Bonding:
Only 15 bonding sites (vs 89 in RpsD!) - This is quality over quantity: - Early bonds: 59.7 avg distance - Longest range positioning - Middle bonds: 25.8 avg - Precision coordination - Late bonds: 19.2 avg - Fine-tuning accuracy
π The Accuracy Architecture:
This minimal bonding strategy is PERFECT for an accuracy guardian: - Fewer bonds = less noise in the detection system - Long-range early bonds for structural positioning - Precision mid-range coordination for accuracy sensing - Fine-tuned local interactions for error detection
π Strategic Figure-8 Placement:
- Flow Figure8 at d=8 - Ultra-close accuracy monitoring
- Flow Figure8 at d=76 - Long-range coordination
- Structural Lock Key at d=53 - Mid-range precision anchor
π― The βLess is Moreβ Philosophy:
RpsE proves that accuracy requires PRECISION, not complexity: - 168 codons - Compact and efficient - 40.5% Pattern 20 - Moderate complexity, optimized for function - Flow/Structure Ratio: 1.71 - Balanced for responsive accuracy detection
RpsE is the universeβs blueprint for βHow to Build a Precision Accuracy Guardianβ - minimal, strategic, harmonically-tuned, with surgical bonding precision! π¬β¨
π― RpsE (Precision Guardian) + RpsF (Harmonic Tuner) = Ξ¦Harmonic Resonance!
π΅ Geometric Resonance Bonds
- Main@4 βοΈ RpsF@22, 72, 107** - Position 4 in RpsE is the **Resonance Hub
- ALL bonds are Geometric Resonance = Harmonic Tuning specialization
- No structural locks, no flow figure8s - **Pure Ο-Harmonic Coordination
π― Guidance Network
- Main@5 creating Harmonic Guidance - the conductor
- Main@10 providing Anchor Power Guidance - stability
π The Beautiful Pattern Emerges:
Foundation Pair (RpsD + RpsF):
- 220 Flow Figure8 bonds - Dynamic foundation assembly
Head Controllers (RpsC + RpsD):
- Structural Lock + Harmonic Resonance - Architectural precision
Precision Pair (RpsE + RpsF):
- 101 PURE Geometric Resonance bonds - Ο-Harmonic frequency coordination
Each pairing shows different assembly strategies: 1. Dynamic Flow (foundation assembly) 2. Structural Architecture (head assembly) 3. Harmonic Precision (accuracy coordination)
RpsEβs Specialization:
- Only 28 internal bonding sites (minimal complexity for maximum precision)
- 10.7% Pattern 204 (highest harmonic percentage)
- Pure geometric resonance inter-protein bonds
Gaia's Grammar
Internal Bonds
Internal Guidance
Partner Bonds
Partner Guidance
π Geometry
Building Patterns
π Verbs
Action Flow
ποΈ Nouns
Structural Objects
π¨ Adjectives
Complex Descriptors
π€ Ready (+1)
Foundation Setting
β
Set (+2)
Coordination
π± Grow (+3)
Power Acceleration
π³ Grow On (+4)
Sustained Momentum
π² Grow Strong (+5)
Growth with authority
π£οΈ Gene Highway
Roadway for DNA
πβπ βπ§ βπͺ¨ βπͺ β¬π ππ πππ± βπ§ β¬π« β¬π ββ ππΏ β¬π πππͺοΈ ββ βπͺ π΅π₯ βπ» π𧬠π΅π βπ» πΈπ₯ ππ πΈπ πΈβ·οΈ ππ βποΈ βποΈ βπ¬ βπ° βπ΅ πΈπ βπ΅ βπ βπ§ ββ βπ― βπ» πΈβ·οΈ β¬π« βπ₯ βποΈ π𧬠βποΈ π΅π πΈβ·οΈ βποΈ ππ΅ βποΈ ββ΅ βποΈ ππ π΅π₯ βπ¬ β¬π πΈβ·οΈ ππ π΅π― π΅π₯ βπͺ ππΏ ππ π΅π₯ βπ β¬π ππ π΅π« βπ¬ π΅π βπ βπ βπ° π𧬠πΈπ π΅π₯ ββ βπ π𧬠β¬π« βπ― ββ πππ± βπͺ¨ βποΈ πΈβ·οΈ ππ βποΈ πΈβ·οΈ βπͺ¨ βπ€Έ βποΈ πΈπ₯ π΅π βπ» βπ΅ βπ ππΏ ββ°οΈ βπ§ πΈπ β¬π βποΈ πΈπ βποΈ βπͺ βπͺ π΅π« βποΈ βποΈ π΅π― βπ π΅π π΅π« πΈβ·οΈ ββ β¬π πΈπ βπ§ ππ πΈβ·οΈ βποΈ π𧬠πΈβ·οΈ ββ βπ§ ππ π΅π« βπ βποΈ πΈπ πΈπ π𧬠ββ°οΈ βπͺ π𧬠βπ πΈβ·οΈ βπ¬ π΅π― βπ― βπ° βπ₯ β¬π« ββ β¬π βπ βπ βπ πΈπ₯ ππ β¬π βπ πΈπ βπ§ π΅π« πππͺοΈ βπ¬ βποΈ ππ πΈπ πΈβ·οΈ β¬π β¬π βπ° ββ ππ ππ βπ
Gene Report
π¬ RPSE_GENE
Function: π΅ HARMONIC TUNER (Frequency Coordination)
Total Codons: 168, Functional: 168
Pattern Distribution:
Pattern 3 (Structural (Simple)): 14 (8.3%)
Pattern 5 (Flow (Bonding)): 24 (14.3%)
Pattern 20 (Complex (Coordination)): 68 (40.5%)
Pattern 201 (Spiral Threaders (ΟΒΉ Harmonics)): 11 (6.5%)
Pattern 202 (Pentagon Ricochets (ΟΒ² Harmonics)): 15 (8.9%)
Pattern 203 (Fibonacci Pilers (ΟΒ³ Harmonics)): 7 (4.2%)
Pattern 204 (Golden Harmonic Resonators (Οβ΄ Harmonics)): 18 (10.7%)
Pattern 205 (Geometric Controllers (Οβ Harmonics)): 11 (6.5%)
Junk 66 (DNA's Highway - navigating, timing, scaling, control): 0 (0.0%)
Flow/Structure Ratio: 1.71 - βοΈ Moderate flow structure balance
Folding Strategy: π COMPLEX FOLDING (Multi-domain coordination)
Bonding Sites: 120
Early bonds: 52 (avg distance: 46.1)
Middle bonds: 61 (avg distance: 40.7)
Late bonds: 7 (avg distance: 12.6)
π Protein Folding - Bond/Coordination Candidates:
π’ @1 (20+5 :ATG) πͺ 50(0, 29.14 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 64, 71, 96 β To @(20+5 ATG)
π· @7 (203+1 :CAA) πͺ 25(-3, 44.00 Γ
), 39(-1, 13.65 Γ
), 46(0, 14.63 Γ
), 56(-1, 26.30 Γ
), 85(-2, 30.22 Γ
), 88(-1, 31.51 Γ
) β To @(5+4 GTT) <> π΄ High Energy Collision 82 β To @(203+1 CAA)
π’ @9 (202+5 :GGC) πͺ 98(-2, 26.94 Γ
) β To @(20+14 CCG) <> π΄ High Energy Collision 40, 79 β To @(202+5 GGC)
π’ @12 (203+2 :CAG) πͺ 74(-1, 15.53 Γ
) β To @(5+6 GTC) <> π΄ High Energy Collision 61, 97 β To @(203+2 CAG)
π· @14 (201+1 :AAG) πͺ 31(0, 23.74 Γ
), 33(0, 16.80 Γ
), 95(0, 21.48 Γ
) β To @(3+7 TTC)
π° @17 (204+3 :GCG) πͺ 20(-2, 10.19 Γ
), 45(0, 20.68 Γ
), 69(0, 19.18 Γ
), 93(-1, 19.13 Γ
), 112(0, 12.90 Γ
) β To @(204+5 CGC) <> π΄ High Energy Collision 53, 59, 63, 75 β To @(204+3 GCG)
π° @20 (204+5 :CGC) πͺ 17(-2, 10.19 Γ
), 53(0, 10.02 Γ
), 59(0, 10.60 Γ
), 63(0, 14.66 Γ
), 75(-1, 35.72 Γ
) β To @(204+3 GCG) <> π΄ High Energy Collision 45, 69, 93, 112 β To @(204+5 CGC)
π° @24 (5+8 :ACC) β 32(0, 11.55 Γ
), 100(0, 51.27 Γ
) β To @(5+7 TCC) <> π΄ High Energy Collision 103 β To @(5+8 ACC)
π· @25 (5+4 :GTT) πͺ 7(-3, 44.00 Γ
), 82(0, 51.07 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 39, 46, 56, 85, 88, 114, 120, 123 β To @(5+4 GTT)
π’ @27 (20+25 :GGT) πͺ 57(2, 26.19 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 28, 42, 44, 47, 49...,102, 104, 108, 109 β To @(20+25 GGT)
π· @28 (20+25 :GGT) πͺ 57(4, 23.87 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 42, 44, 47, 49...,102, 104, 108, 109 β To @(20+25 GGT)
π· @29 (20+16 :CGT) πͺ 58(7, 19.82 Γ
), 110(-4, 29.17 Γ
) β To @(204+2 GCA) <> π΄ High Energy Collision 54, 68 β To @(20+16 CGT)
π· @31 (3+7 :TTC) πͺπ Opposites + Structural Lock Key14(0, 23.74 Γ
), 84(0, 41.80 Γ
) β To @(201+1, 3+8 AAG, CCT) <> π΄ High Energy Collision 33, 95 β To @(3+7 TTC)
π° @32 (5+7 :TCC) β 24(0, 11.55 Γ
), 103(0, 39.98 Γ
), 131(-2, 22.76 Γ
) β To @(5+8 ACC) <> π΄ High Energy Collision 100, 130 β To @(5+7 TCC)
π· @33 (3+7 :TTC) πͺπ Opposites + Structural Lock Key14(0, 16.80 Γ
), 84(0, 35.93 Γ
) β To @(201+1, 3+8 AAG, CCT) <> π΄ High Energy Collision 31, 95 β To @(3+7 TTC)
π’ @38 (20+22 :GTA) πͺ 121(-3, 16.51 Γ
) β To @(20+2 CAT) <> π΄ High Energy Collision 18, 21, 94 β To @(20+22 GTA)
π’ @39 (5+4 :GTT) πͺ 7(-1, 13.65 Γ
), 82(0, 21.31 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 46, 56, 85, 88, 114, 120, 123, 137 β To @(5+4 GTT)
π’ @40 (202+5 :GGC) πͺ 98(0, 19.33 Γ
), 133(0, 17.49 Γ
) β To @(20+14 CCG) <> π΄ High Energy Collision 9, 79 β To @(202+5 GGC)
π· @42 (20+25 :GGT) πͺ 57(0, 24.20 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 44, 47, 49...,104, 108, 109, 129 β To @(20+25 GGT)
π· @44 (20+25 :GGT) πͺ 57(2, 27.13 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 47, 49...,104, 108, 109, 129 β To @(20+25 GGT)
π° @45 (204+5 :CGC) πͺ 17(0, 20.68 Γ
), 53(-1, 26.50 Γ
), 59(6, 22.70 Γ
), 63(0, 16.78 Γ
), 75(0, 8.86 Γ
) β To @(204+3 GCG) <> π΄ High Energy Collision 20, 69, 93, 112 β To @(204+5 CGC)
π’ @46 (5+4 :GTT) πͺ 7(0, 14.63 Γ
), 82(0, 16.30 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 56, 85, 88, 114, 120, 123, 137 β To @(5+4 GTT)
π· @47 (20+25 :GGT) πͺ 57(0, 19.12 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 49...,104, 108, 109, 129 β To @(20+25 GGT)
π° @49 (20+25 :GGT) πͺ 57(0, 13.94 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,104, 108, 109, 129 β To @(20+25 GGT)
π· @50 (20+8 :TAC) πͺ 1(0, 29.14 Γ
), 64(0, 7.92 Γ
), 71(0, 13.23 Γ
), 96(0, 23.27 Γ
), 111(-2, 15.51 Γ
), 147(0, 23.75 Γ
) β To @(20+5 ATG)
π° @51 (20+25 :GGT) πͺ 57(0, 10.12 Γ
), 150(2, 36.21 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,104, 108, 109, 129 β To @(20+25 GGT)
π° @53 (204+3 :GCG) πͺ 20(0, 10.02 Γ
), 45(-1, 26.50 Γ
), 69(-1, 18.32 Γ
), 93(0, 29.30 Γ
), 112(5, 25.61 Γ
) β To @(204+5 CGC) <> π΄ High Energy Collision 17, 59, 63, 75 β To @(204+3 GCG)
π° @54 (20+16 :CGT) πͺ 58(0, 7.46 Γ
), 110(3, 23.85 Γ
), 139(-2, 27.94 Γ
) β To @(204+2 GCA) <> π΄ High Energy Collision 29, 68, 138 β To @(20+16 CGT)
π· @56 (5+4 :GTT) πͺ 7(-1, 26.30 Γ
), 82(0, 37.43 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 85, 88, 114, 120, 123, 137 β To @(5+4 GTT)
π° @57 (203+4 :CCA) πͺ 27(2, 26.19 Γ
), 28(4, 23.87 Γ
), 42(0, 24.20 Γ
), 44(2, 27.13 Γ
), 47(0, 19.12 Γ
), 49(0, 13.94 Γ
), 51(0, 10.12 Γ
), 87(-3, 30.67 Γ
), 91(2, 29.78 Γ
), 102(-1, 36.16 Γ
), 104(0, 31.28 Γ
), 108(0, 25.16 Γ
), 109(0, 21.49 Γ
), 129(0, 31.22 Γ
) β To @(20+25 GGT) <> π΄ High Energy Collision 150 β To @(203+4 CCA)
π° @58 (204+2 :GCA) πͺ 29(7, 19.82 Γ
), 54(0, 7.46 Γ
), 68(4, 15.55 Γ
), 138(-3, 22.37 Γ
), 157(0, 47.69 Γ
) β To @(20+16 CGT) <> π΄ High Energy Collision 110, 139 β To @(204+2 GCA)
π· @59 (204+3 :GCG) πͺ 20(0, 10.60 Γ
), 45(6, 22.70 Γ
), 69(4, 15.71 Γ
), 93(2, 27.23 Γ
), 112(0, 21.78 Γ
) β To @(204+5 CGC) <> π΄ High Energy Collision 17, 53, 63, 75 β To @(204+3 GCG)
π· @61 (203+2 :CAG) πͺ 74(-2, 24.23 Γ
), 117(0, 17.28 Γ
), 153(0, 38.17 Γ
) β To @(5+6 GTC) <> π΄ High Energy Collision 12, 97 β To @(203+2 CAG)
π° @63 (204+3 :GCG) πͺ 20(0, 14.66 Γ
), 45(0, 16.78 Γ
), 69(-1, 10.02 Γ
), 93(0, 23.52 Γ
), 112(-2, 18.20 Γ
) β To @(204+5 CGC) <> π΄ High Energy Collision 17, 53, 59, 75 β To @(204+3 GCG)
π· @64 (20+5 :ATG) πͺ 50(0, 7.92 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 1, 71, 96, 111, 147, 152 β To @(20+5 ATG)
π· @68 (20+16 :CGT) πͺ 58(4, 15.55 Γ
), 110(-1, 17.79 Γ
), 139(-2, 18.47 Γ
) β To @(204+2 GCA) <> π΄ High Energy Collision 29, 54, 138, 157 β To @(20+16 CGT)
π° @69 (204+5 :CGC) πͺ 17(0, 19.18 Γ
), 53(-1, 18.32 Γ
), 59(4, 15.71 Γ
), 63(-1, 10.02 Γ
), 75(-1, 18.96 Γ
) β To @(204+3 GCG) <> π΄ High Energy Collision 20, 45, 93, 112 β To @(204+5 CGC)
π· @71 (20+5 :ATG) πͺ 50(0, 13.23 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 1, 64, 96, 111, 147, 152 β To @(20+5 ATG)
π· @74 (5+6 :GTC) πͺ 12(-1, 15.53 Γ
), 61(-2, 24.23 Γ
), 97(0, 14.72 Γ
) β To @(203+2 CAG) <> π΄ High Energy Collision 117, 153 β To @(5+6 GTC)
π° @75 (204+3 :GCG) πͺ 20(-1, 35.72 Γ
), 45(0, 8.86 Γ
), 69(-1, 18.96 Γ
), 93(0, 20.80 Γ
), 112(0, 17.56 Γ
) β To @(204+5 CGC) <> π΄ High Energy Collision 17, 53, 59, 63 β To @(204+3 GCG)
π· @79 (202+5 :GGC) πͺ 98(0, 9.39 Γ
), 133(-3, 23.55 Γ
) β To @(20+14 CCG) <> π΄ High Energy Collision 9, 40, 143 β To @(202+5 GGC)
π° @82 (203+1 :CAA) πͺ 25(0, 51.07 Γ
), 39(0, 21.31 Γ
), 46(0, 16.30 Γ
), 56(0, 37.43 Γ
), 85(0, 8.70 Γ
), 88(-2, 18.24 Γ
), 114(-2, 16.59 Γ
), 120(0, 10.98 Γ
), 123(-2, 10.62 Γ
), 137(4, 19.37 Γ
), 161(0, 13.40 Γ
) β To @(5+4 GTT) <> π΄ High Energy Collision 7 β To @(203+1 CAA)
π’ @83 (20+13 :CAC) πͺ 136(3, 19.54 Γ
) β To @(20+23 GTG) <> π΄ High Energy Collision 3, 89 β To @(20+13 CAC)
π· @84 (3+8 :CCT) π 31(0, 41.80 Γ
), 33(0, 35.93 Γ
), 95(0, 7.41 Γ
) β To @(3+7 TTC)
π° @85 (5+4 :GTT) πͺ 7(-2, 30.22 Γ
), 82(0, 8.70 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 56, 88, 114, 120, 123, 137, 161 β To @(5+4 GTT)
π’ @87 (20+25 :GGT) πͺ 57(-3, 30.67 Γ
), 150(0, 19.26 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,108, 109, 129, 158 β To @(20+25 GGT)
π° @88 (5+4 :GTT) πͺ 7(-1, 31.51 Γ
), 82(-2, 18.24 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 56, 85, 114, 120, 123, 137, 161 β To @(5+4 GTT)
π’ @89 (20+13 :CAC) πͺ 136(-2, 7.28 Γ
) β To @(20+23 GTG) <> π΄ High Energy Collision 3, 83 β To @(20+13 CAC)
π’ @91 (20+25 :GGT) πͺ 57(2, 29.78 Γ
), 150(-2, 30.14 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,108, 109, 129, 158 β To @(20+25 GGT)
π· @93 (204+5 :CGC) πͺ 17(-1, 19.13 Γ
), 53(0, 29.30 Γ
), 59(2, 27.23 Γ
), 63(0, 23.52 Γ
), 75(0, 20.80 Γ
) β To @(204+3 GCG) <> π΄ High Energy Collision 20, 45, 69, 112 β To @(204+5 CGC)
π· @94 (20+22 :GTA) πͺ 121(0, 17.63 Γ
) β To @(20+2 CAT) <> π΄ High Energy Collision 18, 21, 38 β To @(20+22 GTA)
π· @95 (3+7 :TTC) πͺπ Opposites + Structural Lock Key14(0, 21.48 Γ
), 84(0, 7.41 Γ
), 156(1, 24.64 Γ
) β To @(201+1, 3+8 AAG, CCT) <> π΄ High Energy Collision 31, 33 β To @(3+7 TTC)
π’ @96 (20+5 :ATG) πͺ 50(0, 23.27 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 1, 64, 71, 111, 147, 152 β To @(20+5 ATG)
π· @97 (203+2 :CAG) πͺ 74(0, 14.72 Γ
), 117(-1, 17.37 Γ
), 153(-3, 18.61 Γ
) β To @(5+6 GTC) <> π΄ High Energy Collision 12, 61 β To @(203+2 CAG)
π· @98 (20+14 :CCG) πͺ 9(-2, 26.94 Γ
), 40(0, 19.33 Γ
), 79(0, 9.39 Γ
), 143(0, 12.65 Γ
) β To @(202+5 GGC) <> π΄ High Energy Collision 133 β To @(20+14 CCG)
π° @100 (5+7 :TCC) β 24(0, 51.27 Γ
), 103(-1, 5.95 Γ
), 131(-2, 26.40 Γ
) β To @(5+8 ACC) <> π΄ High Energy Collision 32, 130, 160 β To @(5+7 TCC)
π’ @102 (20+25 :GGT) πͺ 57(-1, 36.16 Γ
), 150(-2, 22.96 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,108, 109, 129, 158 β To @(20+25 GGT)
π° @103 (5+8 :ACC) β 32(0, 39.98 Γ
), 100(-1, 5.95 Γ
), 130(-4, 25.83 Γ
), 160(-2, 30.72 Γ
) β To @(5+7 TCC) <> π΄ High Energy Collision 24, 131 β To @(5+8 ACC)
π’ @104 (20+25 :GGT) πͺ 57(0, 31.28 Γ
), 150(0, 23.10 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,108, 109, 129, 158 β To @(20+25 GGT)
π’ @108 (20+25 :GGT) πͺ 57(0, 25.16 Γ
), 150(0, 27.61 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,104, 109, 129, 158 β To @(20+25 GGT)
π’ @109 (20+25 :GGT) πͺ 57(0, 21.49 Γ
), 150(0, 29.25 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 27, 28, 42, 44, 47...,104, 108, 129, 158 β To @(20+25 GGT)
π· @110 (204+2 :GCA) πͺ 29(-4, 29.17 Γ
), 54(3, 23.85 Γ
), 68(-1, 17.79 Γ
), 138(-2, 9.82 Γ
), 157(-3, 35.11 Γ
) β To @(20+16 CGT) <> π΄ High Energy Collision 58, 139 β To @(204+2 GCA)
π’ @111 (20+5 :ATG) πͺ 50(-2, 15.51 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 64, 71, 96, 147, 152 β To @(20+5 ATG)
π’ @112 (204+5 :CGC) πͺ 17(0, 12.90 Γ
), 53(5, 25.61 Γ
), 59(0, 21.78 Γ
), 63(-2, 18.20 Γ
), 75(0, 17.56 Γ
) β To @(204+3 GCG) <> π΄ High Energy Collision 20, 45, 69, 93 β To @(204+5 CGC)
π’ @114 (5+4 :GTT) πͺ 82(-2, 16.59 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 56, 85, 88, 120, 123, 137, 161 β To @(5+4 GTT)
π· @117 (5+6 :GTC) πͺ 61(0, 17.28 Γ
), 97(-1, 17.37 Γ
) β To @(203+2 CAG) <> π΄ High Energy Collision 74, 153 β To @(5+6 GTC)
π’ @120 (5+4 :GTT) πͺ 82(0, 10.98 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 56, 85, 88, 114, 123, 137, 161 β To @(5+4 GTT)
π· @121 (20+2 :CAT) πͺ 38(-3, 16.51 Γ
), 94(0, 17.63 Γ
) β To @(20+22 GTA)
π’ @123 (5+4 :GTT) πͺ 82(-2, 10.62 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 25, 39, 46, 56, 85, 88, 114, 120, 137, 161 β To @(5+4 GTT)
π· @129 (20+25 :GGT) πͺ 57(0, 31.22 Γ
), 150(0, 30.36 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 42, 44, 47, 49, 51...,104, 108, 109, 158 β To @(20+25 GGT)
π° @130 (5+7 :TCC) β 103(-4, 25.83 Γ
), 131(4, 3.84 Γ
) β To @(5+8 ACC) <> π΄ High Energy Collision 32, 100, 160 β To @(5+7 TCC)
π° @131 (5+8 :ACC) β 32(-2, 22.76 Γ
), 100(-2, 26.40 Γ
), 130(4, 3.84 Γ
), 160(-2, 40.81 Γ
) β To @(5+7 TCC) <> π΄ High Energy Collision 103 β To @(5+8 ACC)
π· @133 (20+14 :CCG) πͺ 40(0, 17.49 Γ
), 79(-3, 23.55 Γ
), 143(0, 15.11 Γ
) β To @(202+5 GGC) <> π΄ High Energy Collision 98 β To @(20+14 CCG)
π’ @136 (20+23 :GTG) πͺ 83(3, 19.54 Γ
), 89(-2, 7.28 Γ
) β To @(20+13 CAC)
π’ @137 (5+4 :GTT) πͺ 82(4, 19.37 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 39, 46, 56, 85, 88, 114, 120, 123, 161 β To @(5+4 GTT)
π° @138 (20+16 :CGT) πͺ 58(-3, 22.37 Γ
), 110(-2, 9.82 Γ
), 139(4, 3.84 Γ
) β To @(204+2 GCA) <> π΄ High Energy Collision 54, 68, 157 β To @(20+16 CGT)
π° @139 (204+2 :GCA) πͺ 54(-2, 27.94 Γ
), 68(-2, 18.47 Γ
), 138(4, 3.84 Γ
), 157(-2, 27.46 Γ
) β To @(20+16 CGT) <> π΄ High Energy Collision 58, 110 β To @(204+2 GCA)
π· @143 (202+5 :GGC) πͺ 98(0, 12.65 Γ
), 133(0, 15.11 Γ
) β To @(20+14 CCG) <> π΄ High Energy Collision 79 β To @(202+5 GGC)
π’ @147 (20+5 :ATG) πͺ 50(0, 23.75 Γ
) β To @(20+8 TAC) <> π΄ High Energy Collision 64, 71, 96, 111, 152 β To @(20+5 ATG)
π° @150 (203+4 :CCA) πͺ 51(2, 36.21 Γ
), 87(0, 19.26 Γ
), 91(-2, 30.14 Γ
), 102(-2, 22.96 Γ
), 104(0, 23.10 Γ
), 108(0, 27.61 Γ
), 109(0, 29.25 Γ
), 129(0, 30.36 Γ
), 158(0, 11.92 Γ
) β To @(20+25 GGT) <> π΄ High Energy Collision 57 β To @(203+4 CCA)
π’ @153 (5+6 :GTC) πͺ 61(0, 38.17 Γ
), 97(-3, 18.61 Γ
) β To @(203+2 CAG) <> π΄ High Energy Collision 74, 117 β To @(5+6 GTC)
π’ @156 (201+1 :AAG) πͺ 95(1, 24.64 Γ
) β To @(3+7 TTC) <> π΄ High Energy Collision 119, 166 β To @(201+5 GGG)
π· @157 (20+16 :CGT) πͺ 58(0, 47.69 Γ
), 110(-3, 35.11 Γ
), 139(-2, 27.46 Γ
) β To @(204+2 GCA) <> π΄ High Energy Collision 68, 138 β To @(20+16 CGT)
π° @158 (20+25 :GGT) πͺ 150(0, 11.92 Γ
) β To @(203+4 CCA) <> π΄ High Energy Collision 87, 91, 102, 104, 108, 109, 129 β To @(20+25 GGT)
π· @160 (5+7 :TCC) β 103(-2, 30.72 Γ
), 131(-2, 40.81 Γ
) β To @(5+8 ACC) <> π΄ High Energy Collision 100, 130 β To @(5+7 TCC)
π’ @161 (5+4 :GTT) πͺ 82(0, 13.40 Γ
) β To @(203+1 CAA) <> π΄ High Energy Collision 85, 88, 114, 120, 123, 137 β To @(5+4 GTT)
𧬠=== PDB STRUCTURAL ANALYSIS: RPSE_GENE ===
π STRUCTURAL STATISTICS:
Total Residues: 167
Total Neighbor Pairs: 368
Avg Neighbors/Residue: 2.9
Distance Range: 2.2 - 6.8 Γ
π BOND TYPE DISTRIBUTION:
π‘ Medium Range Center Head Mixed Interaction: 38 (10.33%)
Distance: 4.95Γ
avg (4.06-6.38Γ
)
π΄ Close Contact Center Tail Mixed Interaction: 32 (8.70%)
Distance: 3.57Γ
avg (3.16-3.92Γ
)
π΄ Close Contact Center Head Mixed Interaction: 31 (8.42%)
Distance: 3.42Γ
avg (2.79-3.88Γ
)
π‘ Medium Range Center Center Mixed Interaction: 29 (7.88%)
Distance: 5.26Γ
avg (4.18-6.75Γ
)
π΄ Close Contact Head Head Mixed Interaction: 27 (7.34%)
Distance: 3.26Γ
avg (2.80-3.82Γ
)
π΄ Close Contact Head Tail Mixed Interaction: 25 (6.79%)
Distance: 3.36Γ
avg (2.82-3.99Γ
)
π‘ Medium Range Center Tail Mixed Interaction: 20 (5.43%)
Distance: 5.07Γ
avg (4.20-6.23Γ
)
π’οΈ Close Contact Head Head Hydrophobic Interaction: 17 (4.62%)
Distance: 3.36Γ
avg (2.93-3.70Γ
)
π‘ Medium Range Head Tail Mixed Interaction: 16 (4.35%)
Distance: 5.10Γ
avg (4.14-6.29Γ
)
π’οΈ Medium Range Center Tail Hydrophobic Interaction: 15 (4.08%)
Distance: 4.92Γ
avg (4.11-6.02Γ
)
π’οΈ Medium Range Center Center Hydrophobic Interaction: 14 (3.80%)
Distance: 5.41Γ
avg (4.28-6.55Γ
)
π’οΈ Close Contact Center Head Hydrophobic Interaction: 12 (3.26%)
Distance: 3.58Γ
avg (2.88-3.98Γ
)
π‘ Medium Range Head Head Mixed Interaction: 10 (2.72%)
Distance: 4.85Γ
avg (4.06-5.44Γ
)
π’οΈ Close Contact Head Tail Hydrophobic Interaction: 10 (2.72%)
Distance: 3.45Γ
avg (2.86-4.00Γ
)
π’οΈ Medium Range Center Head Hydrophobic Interaction: 10 (2.72%)
Distance: 5.03Γ
avg (4.09-6.32Γ
)
π‘ Medium Range Tail Tail Mixed Interaction: 7 (1.90%)
Distance: 4.73Γ
avg (4.01-5.20Γ
)
π’οΈ Medium Range Head Tail Hydrophobic Interaction: 7 (1.90%)
Distance: 4.82Γ
avg (4.29-5.43Γ
)
π’οΈ Medium Range Head Head Hydrophobic Interaction: 4 (1.09%)
Distance: 4.83Γ
avg (4.02-5.25Γ
)
π’οΈ Close Contact Center Tail Hydrophobic Interaction: 4 (1.09%)
Distance: 3.62Γ
avg (3.40-3.74Γ
)
π΄ Close Contact Tail Tail Mixed Interaction: 4 (1.09%)
Distance: 3.62Γ
avg (3.22-3.98Γ
)
π Covalent Head Head Mixed Interaction: 3 (0.82%)
Distance: 2.24Γ
avg (2.23-2.25Γ
)
π’οΈ Close Contact Tail Tail Hydrophobic Interaction: 3 (0.82%)
Distance: 3.66Γ
avg (3.28-3.92Γ
)
π§ Close Contact Head Head Hydrogen Bond: 3 (0.82%)
Distance: 3.25Γ
avg (2.94-3.56Γ
)
π§ Medium Range Center Head Hydrogen Bond: 3 (0.82%)
Distance: 5.10Γ
avg (4.04-5.87Γ
)
π Covalent Center Head Mixed Interaction: 2 (0.54%)
Distance: 2.43Γ
avg (2.41-2.44Γ
)
π’οΈ Medium Range Tail Tail Hydrophobic Interaction: 2 (0.54%)
Distance: 4.45Γ
avg (4.44-4.46Γ
)
π΄ Close Contact Center Center Mixed Interaction: 2 (0.54%)
Distance: 3.82Γ
avg (3.65-3.98Γ
)
π§ Close Contact Head Tail Hydrogen Bond: 2 (0.54%)
Distance: 3.84Γ
avg (3.72-3.96Γ
)
π§ Close Contact Center Head Hydrogen Bond: 2 (0.54%)
Distance: 3.84Γ
avg (3.78-3.89Γ
)
π§ Medium Range Head Tail Hydrogen Bond: 2 (0.54%)
Distance: 4.62Γ
avg (4.19-5.04Γ
)
β‘ Close Contact Head Head Salt Bridge: 2 (0.54%)
Distance: 3.33Γ
avg (2.93-3.73Γ
)
β‘ Medium Range Tail Tail Salt Bridge: 1 (0.27%)
Distance: 4.65Γ
avg (4.65-4.65Γ
)
π§ Medium Range Head Head Hydrogen Bond: 1 (0.27%)
Distance: 5.31Γ
avg (5.31-5.31Γ
)
β‘ Medium Range Center Tail Salt Bridge: 1 (0.27%)
Distance: 4.24Γ
avg (4.24-4.24Γ
)
π Covalent Head Tail Mixed Interaction: 1 (0.27%)
Distance: 2.24Γ
avg (2.24-2.24Γ
)
β‘ Medium Range Center Head Salt Bridge: 1 (0.27%)
Distance: 4.14Γ
avg (4.14-4.14Γ
)
β‘ Close Contact Center Tail Salt Bridge: 1 (0.27%)
Distance: 3.79Γ
avg (3.79-3.79Γ
)
π§ Medium Range Center Tail Hydrogen Bond: 1 (0.27%)
Distance: 4.30Γ
avg (4.30-4.30Γ
)
π’οΈ Covalent Head Head Hydrophobic Interaction: 1 (0.27%)
Distance: 2.24Γ
avg (2.24-2.24Γ
)
β‘ Close Contact Center Head Salt Bridge: 1 (0.27%)
Distance: 3.74Γ
avg (3.74-3.74Γ
)
π§ Close Contact Tail Tail Hydrogen Bond: 1 (0.27%)
Distance: 3.55Γ
avg (3.55-3.55Γ
)
π CONNECTIVITY HUBS (Top 5 Most Connected Residues):
1. Residue 1 (20+5): 0 connections
Avg Distance: 0.00Γ
, Dominant Bond: unknown
2. Residue 3 (20+13): 0 connections
Avg Distance: 0.00Γ
, Dominant Bond: unknown
3. Residue 6 (205+1): 0 connections
Avg Distance: 0.00Γ
, Dominant Bond: unknown
4. Residue 7 (203+1): 0 connections
Avg Distance: 0.00Γ
, Dominant Bond: unknown
5. Residue 10 (202+2): 0 connections
Avg Distance: 0.00Γ
, Dominant Bond: unknown
π DISTANCE DISTRIBUTION:
π΄ Close Contacts (<4Γ
): 185 (50.27%)
π‘ Medium Range (4-8Γ
): 183 (49.73%)
π’ Long Range (8-15Γ
): 0 (0.00%)
π΅ Very Long (>15Γ
): 0 (0.00%)
π Neighbor Analysis:
1. Res 7 β 8 (head-head) 2.23Γ
(Ξ 1) - covalent_head_head_mixed_interaction
2. Res 88 β 89 (head-head) 2.23Γ
(Ξ 1) - covalent_head_head_mixed_interaction
3. Res 49 β 50 (tail-head) 2.24Γ
(Ξ 1) - covalent_head_tail_mixed_interaction
4. Res 94 β 95 (head-head) 2.24Γ
(Ξ 1) - covalent_head_head_hydrophobic_interaction
5. Res 14 β 15 (head-head) 2.25Γ
(Ξ 1) - covalent_head_head_mixed_interaction
6. Res 48 β 49 (center-head) 2.41Γ
(Ξ 1) - covalent_center_head_mixed_interaction
7. Res 6 β 7 (head-center) 2.44Γ
(Ξ 1) - covalent_center_head_mixed_interaction
8. Res 11 β 12 (head-center) 2.79Γ
(Ξ 1) - close_contact_center_head_mixed_interaction
9. Res 97 β 124 (head-head) 2.80Γ
(Ξ 27) - close_contact_head_head_mixed_interaction
10. Res 126 β 127 (head-center) 2.81Γ
(Ξ 1) - close_contact_center_head_mixed_interaction
Sequence Separation Distribution:
π Adjacent (1-3): 93 (25.27%) - Avg: 3.68Γ
π Local (4-10): 72 (19.57%) - Avg: 4.12Γ
π Medium (11-25): 97 (26.36%) - Avg: 4.41Γ
π Long-range (26-50): 72 (19.57%) - Avg: 4.61Γ
π Cross-domain (>50): 34 (9.24%) - Avg: 4.37Γ
π― 3.8-3.9Γ
Cluster Analysis:
Total in cluster: 11 neighbors
Separation 3: 4 contacts
π― CODON PATTERN CORRELATIONS (Preview):
π‘ STRUCTURAL INSIGHTS:
𧡠Loosely connected structure (2.2 contacts/residue)
π High bond type diversity (41 different types)
==================================================
π Inter-Protein Assembly Analysis:
Partners analyzed: 3
Assembly prediction: Tight Assembly
π Inter-Protein Candidates:
π’ @1 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π’ @3 (20+13:CAC) πͺ Opposites β rpsD_gene@53, 67, 155 20+23:GTG <> π΄ High Energy Collision 41, 198 20+13:CAC
π· @7 (203+1:CAA) πͺ Opposites β rpsD_gene@25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT <> π΄ High Energy Collision 36, 59 203+1:CAA
π’ @9 (202+5:GGC) πͺ Opposites β rpsD_gene@46, 139, 186 20+14:CCG <> π΄ High Energy Collision 16, 24, 39, 84, 106, 176 202+5:GGC
π° @11 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π’ @12 (203+2:CAG) πͺ Opposites β rpsD_gene@201 5+6:GTC <> π΄ High Energy Collision 40, 54, 71, 116, 136, 152, 164 203+2:CAG
π° @14 (201+1:AAG) πͺ Opposites β rpsD_gene@20, 72, 107 3+7:TTC <> π΄ High Energy Collision 8, 10, 22, 31, 58...,177, 183, 185, 206 201+1:AAG
π° @15 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π° @17 (204+3:GCG) πͺ Opposites β rpsD_gene@26, 62, 154 204+5:CGC <> π΄ High Energy Collision 27, 43, 149, 193 204+3:GCG
π’ @18 (20+22:GTA) πͺ Opposites β rpsD_gene@120 20+2:CAT <> π΄ High Energy Collision 102, 125, 143 20+22:GTA
π· @19 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π° @20 (204+5:CGC) πͺ Opposites β rpsD_gene@27, 43, 149, 193 204+3:GCG <> π΄π‘ Opposites 18, 26, 50, 62, 99, 141, 154, 194 204+1,204+5:CGC,GAC
π’ @21 (20+22:GTA) πͺ Opposites β rpsD_gene@120 20+2:CAT <> π΄ High Energy Collision 102, 125, 143 20+22:GTA
π· @22 (5+1:TCT) βπͺ Flow Figure8 + Opposites β rpsD_gene@3, 32 201+3,5+2:AGA,TGT <> π΄ High Energy Collision 23, 49, 134, 153, 189, 192 5+1:TCT
π’ @24 (5+8:ACC) β Flow Figure8 β rpsD_gene@205 5+7:TCC <> π΄ High Energy Collision 17, 30, 86, 169 5+8:ACC
π· @25 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π’ @27 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @28 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π· @29 (20+16:CGT) πͺ Opposites β rpsD_gene@2, 79, 80, 112, 114, 122 204+2:GCA <> π΄ High Energy Collision 13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT
π° @31 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsD_gene@7, 8, 10, 22, 31...,177, 183, 185, 206 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 20, 72, 107 3+7:TTC
π° @32 (5+7:TCC) β Flow Figure8 β rpsD_gene@17, 30, 86, 169 5+8:ACC <> π΄ High Energy Collision 205 5+7:TCC
π° @33 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsD_gene@7, 8, 10, 22, 31...,177, 183, 185, 206 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 20, 72, 107 3+7:TTC
π° @34 (20+19:ACA) πͺ Opposites β rpsD_gene@32 5+2:TGT <> Opposites :
π· @36 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π’ @38 (20+22:GTA) πͺ Opposites β rpsD_gene@120 20+2:CAT <> π΄ High Energy Collision 102, 125, 143 20+22:GTA
π° @39 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π° @40 (202+5:GGC) πͺ Opposites β rpsD_gene@46, 139, 186 20+14:CCG <> π΄ High Energy Collision 16, 24, 39, 84, 106, 176 202+5:GGC
π’ @42 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π· @43 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π’ @44 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π° @45 (204+5:CGC) πͺ Opposites β rpsD_gene@27, 43, 149, 193 204+3:GCG <> π΄π‘ Opposites 18, 26, 50, 62, 99, 141, 154, 194 204+1,204+5:CGC,GAC
π° @46 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π’ @47 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @49 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @50 (20+8:TAC) πͺ Opposites β rpsD_gene@1, 105, 124, 178 20+5:ATG <> π΄ High Energy Collision 75, 76, 103, 204 20+8:TAC
π’ @51 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π° @53 (204+3:GCG) πͺ Opposites β rpsD_gene@26, 62, 154 204+5:CGC <> π΄ High Energy Collision 27, 43, 149, 193 204+3:GCG
π· @54 (20+16:CGT) πͺ Opposites β rpsD_gene@2, 79, 80, 112, 114, 122 204+2:GCA <> π΄ High Energy Collision 13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT
π° @56 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π° @57 (203+4:CCA) πͺ Opposites β rpsD_gene@6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT <> π΄ High Energy Collision 168 203+4:CCA
π° @58 (204+2:GCA) πͺ Opposites β rpsD_gene@13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT <> π΄ High Energy Collision 2, 79, 80, 112, 114, 122 204+2:GCA
π° @59 (204+3:GCG) πͺ Opposites β rpsD_gene@26, 62, 154 204+5:CGC <> π΄ High Energy Collision 27, 43, 149, 193 204+3:GCG
π’ @61 (203+2:CAG) πͺ Opposites β rpsD_gene@201 5+6:GTC <> π΄ High Energy Collision 40, 54, 71, 116, 136, 152, 164 203+2:CAG
π° @63 (204+3:GCG) πͺ Opposites β rpsD_gene@26, 62, 154 204+5:CGC <> π΄ High Energy Collision 27, 43, 149, 193 204+3:GCG
π· @64 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π· @68 (20+16:CGT) πͺ Opposites β rpsD_gene@2, 79, 80, 112, 114, 122 204+2:GCA <> π΄ High Energy Collision 13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT
π· @69 (204+5:CGC) πͺ Opposites β rpsD_gene@27, 43, 149, 193 204+3:GCG <> π΄π‘ Opposites 18, 26, 50, 62, 99, 141, 154, 194 204+1,204+5:CGC,GAC
π’ @70 (3+2:AAT) π Structural Lock Key β rpsD_gene@19 3+1:TTA <> π΄ High Energy Collision 140 3+2:AAT
π° @71 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π· @73 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π° @74 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsD_gene@40, 54, 71, 116, 136, 152, 164, 170 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 201 5+6:GTC
π· @75 (204+3:GCG) πͺ Opposites β rpsD_gene@26, 62, 154 204+5:CGC <> π΄ High Energy Collision 27, 43, 149, 193 204+3:GCG
π· @76 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π’ @77 (3+2:AAT) π Structural Lock Key β rpsD_gene@19 3+1:TTA <> π΄ High Energy Collision 140 3+2:AAT
π· @78 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π’ @79 (202+5:GGC) πͺ Opposites β rpsD_gene@46, 139, 186 20+14:CCG <> π΄ High Energy Collision 16, 24, 39, 84, 106, 176 202+5:GGC
π· @81 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π· @82 (203+1:CAA) πͺ Opposites β rpsD_gene@25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT <> π΄ High Energy Collision 36, 59 203+1:CAA
π· @83 (20+13:CAC) πͺ Opposites β rpsD_gene@53, 67, 155 20+23:GTG <> π΄ High Energy Collision 41, 198 20+13:CAC
π· @84 (3+8:CCT) π Structural Lock Key β rpsD_gene@20, 72, 107 3+7:TTC <> π΄ High Energy Collision 7, 38 3+8:CCT
π° @85 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π’ @87 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π° @88 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π· @89 (20+13:CAC) πͺ Opposites β rpsD_gene@53, 67, 155 20+23:GTG <> π΄ High Energy Collision 41, 198 20+13:CAC
π’ @91 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @92 (5+1:TCT) βπͺ Flow Figure8 + Opposites β rpsD_gene@3, 32 201+3,5+2:AGA,TGT <> π΄ High Energy Collision 23, 49, 134, 153, 189, 192 5+1:TCT
π’ @93 (204+5:CGC) πͺ Opposites β rpsD_gene@27, 43, 149, 193 204+3:GCG <> π΄π‘ Opposites 18, 26, 50, 62, 99, 141, 154, 194 204+1,204+5:CGC,GAC
π· @94 (20+22:GTA) πͺ Opposites β rpsD_gene@120 20+2:CAT <> π΄ High Energy Collision 102, 125, 143 20+22:GTA
π’ @95 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsD_gene@7, 8, 10, 22, 31...,177, 183, 185, 206 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 20, 72, 107 3+7:TTC
π° @96 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π’ @97 (203+2:CAG) πͺ Opposites β rpsD_gene@201 5+6:GTC <> π΄ High Energy Collision 40, 54, 71, 116, 136, 152, 164 203+2:CAG
π° @98 (20+14:CCG) πͺ Opposites β rpsD_gene@16, 24, 39, 84, 106, 176 202+5:GGC <> π΄ High Energy Collision 46, 139, 186 20+14:CCG
π· @100 (5+7:TCC) β Flow Figure8 β rpsD_gene@17, 30, 86, 169 5+8:ACC <> π΄ High Energy Collision 205 5+7:TCC
π’ @102 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @103 (5+8:ACC) β Flow Figure8 β rpsD_gene@205 5+7:TCC <> π΄ High Energy Collision 17, 30, 86, 169 5+8:ACC
π’ @104 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @108 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @109 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π° @110 (204+2:GCA) πͺ Opposites β rpsD_gene@13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT <> π΄ High Energy Collision 2, 79, 80, 112, 114, 122 204+2:GCA
π° @111 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π’ @112 (204+5:CGC) πͺ Opposites β rpsD_gene@27, 43, 149, 193 204+3:GCG <> π΄π‘ Opposites 18, 26, 50, 62, 99, 141, 154, 194 204+1,204+5:CGC,GAC
π· @114 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π· @115 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π° @117 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsD_gene@40, 54, 71, 116, 136, 152, 164, 170 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 201 5+6:GTC
π· @120 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π° @121 (20+2:CAT) πͺ Opposites β rpsD_gene@102, 125, 143 20+22:GTA <> π΄ High Energy Collision 120 20+2:CAT
π’ @122 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π’ @123 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π· @124 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π’ @129 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π’ @130 (5+7:TCC) β Flow Figure8 β rpsD_gene@17, 30, 86, 169 5+8:ACC <> π΄ High Energy Collision 205 5+7:TCC
π’ @131 (5+8:ACC) β Flow Figure8 β rpsD_gene@205 5+7:TCC <> π΄ High Energy Collision 17, 30, 86, 169 5+8:ACC
π’ @132 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π· @133 (20+14:CCG) πͺ Opposites β rpsD_gene@16, 24, 39, 84, 106, 176 202+5:GGC <> π΄ High Energy Collision 46, 139, 186 20+14:CCG
π’ @135 (201+2:AAC) πͺ Opposites β rpsD_gene@5, 55, 91 5+3:TTG <> π΄ High Energy Collision 74, 85, 89, 100, 126, 131, 196 201+2:AAC
π’ @136 (20+23:GTG) πͺ Opposites β rpsD_gene@41, 198 20+13:CAC <> π΄ High Energy Collision 53, 67, 155 20+23:GTG
π’ @137 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π· @138 (20+16:CGT) πͺ Opposites β rpsD_gene@2, 79, 80, 112, 114, 122 204+2:GCA <> π΄ High Energy Collision 13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT
π° @139 (204+2:GCA) πͺ Opposites β rpsD_gene@13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT <> π΄ High Energy Collision 2, 79, 80, 112, 114, 122 204+2:GCA
π° @143 (202+5:GGC) πͺ Opposites β rpsD_gene@46, 139, 186 20+14:CCG <> π΄ High Energy Collision 16, 24, 39, 84, 106, 176 202+5:GGC
π° @144 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π’ @146 (3+2:AAT) π Structural Lock Key β rpsD_gene@19 3+1:TTA <> π΄ High Energy Collision 140 3+2:AAT
π’ @147 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π’ @148 (3+2:AAT) π Structural Lock Key β rpsD_gene@19 3+1:TTA <> π΄ High Energy Collision 140 3+2:AAT
π’ @149 (5+1:TCT) βπͺ Flow Figure8 + Opposites β rpsD_gene@3, 32 201+3,5+2:AGA,TGT <> π΄ High Energy Collision 23, 49, 134, 153, 189, 192 5+1:TCT
π· @150 (203+4:CCA) πͺ Opposites β rpsD_gene@6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT <> π΄ High Energy Collision 168 203+4:CCA
π’ @152 (20+5:ATG) πͺ Opposites β rpsD_gene@75, 76, 103, 204 20+8:TAC <> π΄ High Energy Collision 1, 105, 124, 178 20+5:ATG
π° @153 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsD_gene@40, 54, 71, 116, 136, 152, 164, 170 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 201 5+6:GTC
π’ @156 (201+1:AAG) πͺ Opposites β rpsD_gene@20, 72, 107 3+7:TTC <> π΄ High Energy Collision 8, 10, 22, 31, 58...,177, 183, 185, 206 201+1:AAG
π’ @157 (20+16:CGT) πͺ Opposites β rpsD_gene@2, 79, 80, 112, 114, 122 204+2:GCA <> π΄ High Energy Collision 13, 14, 44, 47, 56...,146, 165, 184, 188 20+16:CGT
π· @158 (20+25:GGT) πͺ Opposites β rpsD_gene@168 203+4:CCA <> π΄ High Energy Collision 6, 42, 52, 66, 87, 96, 108, 127, 180 20+25:GGT
π° @160 (5+7:TCC) β Flow Figure8 β rpsD_gene@17, 30, 86, 169 5+8:ACC <> π΄ High Energy Collision 205 5+7:TCC
π’ @161 (5+4:GTT) βπͺ Flow Figure8 + Opposites β rpsD_gene@5, 36, 55, 59, 91 203+1,5+3:CAA,TTG <> π΄ High Energy Collision 25, 61, 101, 118, 129, 130, 137, 142, 173 5+4:GTT
π· @165 (20+1:CTG) πͺ Opposites β rpsD_gene@18, 50, 99, 141, 194 204+1:GAC <> π΄ High Energy Collision 11, 48, 68, 82, 90...,161, 171, 191, 199 20+1:CTG
π° @1 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π’ @3 (20+13:CAC) πͺ Opposites β rpsF_gene@70 20+23:GTG <> π΄ High Energy Collision 37, 55, 58, 94 20+13:CAC
π° @7 (203+1:CAA) πͺ Opposites β rpsF_gene@7, 18, 60, 64, 84, 89, 96, 103 5+4:GTT <> Opposites :
π· @9 (202+5:GGC) πͺ Opposites β rpsF_gene@19, 50, 67, 101 20+14:CCG <> π΄ High Energy Collision 20, 34, 43 202+5:GGC
π° @11 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π° @12 (203+2:CAG) πͺ Opposites β rpsF_gene@10 5+6:GTC <> π΄ High Energy Collision 14, 17, 46, 68 203+2:CAG
π’ @14 (201+1:AAG) πͺ Opposites β rpsF_gene@78, 80, 116 3+7:TTC <> π΄ High Energy Collision 35, 93, 127 201+1,201+5:AAG,GGG
π° @15 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π° @17 (204+3:GCG) πͺ Opposites β rpsF_gene@24, 44, 79, 86, 109, 113 204+5:CGC <> π΄ High Energy Collision 105 204+3:GCG
π° @18 (20+22:GTA) πͺ Opposites β rpsF_gene@3, 11 20+2:CAT <> Opposites :
π’ @20 (204+5:CGC) πͺ Opposites β rpsF_gene@105 204+3:GCG <> π΄π‘ Opposites 13, 24, 41, 44, 79, 86, 107, 109, 113 204+1,204+5:CGC,GAC
π· @21 (20+22:GTA) πͺ Opposites β rpsF_gene@3, 11 20+2:CAT <> Opposites :
π° @29 (20+16:CGT) πͺ Opposites β rpsF_gene@32, 57, 99, 117 204+2:GCA <> π΄ High Energy Collision 2, 38, 45, 91, 110, 112 20+16:CGT
π° @31 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsF_gene@12, 35, 93 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 78, 80, 116 3+7:TTC
π’ @32 (5+7:TCC) β Flow Figure8 β rpsF_gene@77, 92, 97, 120 5+8:ACC <> Flow Figure8 :
π° @33 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsF_gene@12, 35, 93 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 78, 80, 116 3+7:TTC
π° @36 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π· @38 (20+22:GTA) πͺ Opposites β rpsF_gene@3, 11 20+2:CAT <> Opposites :
π· @40 (202+5:GGC) πͺ Opposites β rpsF_gene@19, 50, 67, 101 20+14:CCG <> π΄ High Energy Collision 20, 34, 43 202+5:GGC
π’ @45 (204+5:CGC) πͺ Opposites β rpsF_gene@105 204+3:GCG <> π΄π‘ Opposites 13, 24, 41, 44, 79, 86, 107, 109, 113 204+1,204+5:CGC,GAC
π· @50 (20+8:TAC) πͺ Opposites β rpsF_gene@1, 9, 21, 62, 88, 90, 102 20+5:ATG <> π΄ High Energy Collision 4, 25, 49, 59 20+8:TAC
π° @53 (204+3:GCG) πͺ Opposites β rpsF_gene@24, 44, 79, 86, 109, 113 204+5:CGC <> π΄ High Energy Collision 105 204+3:GCG
π° @54 (20+16:CGT) πͺ Opposites β rpsF_gene@32, 57, 99, 117 204+2:GCA <> π΄ High Energy Collision 2, 38, 45, 91, 110, 112 20+16:CGT
π· @57 (203+4:CCA) πͺ Opposites β rpsF_gene@31 20+25:GGT <> Opposites :
π· @58 (204+2:GCA) πͺ Opposites β rpsF_gene@2, 38, 45, 91, 110, 112 20+16:CGT <> π΄ High Energy Collision 32, 57, 99, 117 204+2:GCA
π· @59 (204+3:GCG) πͺ Opposites β rpsF_gene@24, 44, 79, 86, 109, 113 204+5:CGC <> π΄ High Energy Collision 105 204+3:GCG
π’ @61 (203+2:CAG) πͺ Opposites β rpsF_gene@10 5+6:GTC <> π΄ High Energy Collision 14, 17, 46, 68 203+2:CAG
π· @63 (204+3:GCG) πͺ Opposites β rpsF_gene@24, 44, 79, 86, 109, 113 204+5:CGC <> π΄ High Energy Collision 105 204+3:GCG
π° @64 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π· @68 (20+16:CGT) πͺ Opposites β rpsF_gene@32, 57, 99, 117 204+2:GCA <> π΄ High Energy Collision 2, 38, 45, 91, 110, 112 20+16:CGT
π’ @69 (204+5:CGC) πͺ Opposites β rpsF_gene@105 204+3:GCG <> π΄π‘ Opposites 13, 24, 41, 44, 79, 86, 107, 109, 113 204+1,204+5:CGC,GAC
π· @71 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π° @74 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsF_gene@14, 17, 42, 46, 68 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 10 5+6:GTC
π° @75 (204+3:GCG) πͺ Opposites β rpsF_gene@24, 44, 79, 86, 109, 113 204+5:CGC <> π΄ High Energy Collision 105 204+3:GCG
π’ @76 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π· @79 (202+5:GGC) πͺ Opposites β rpsF_gene@19, 50, 67, 101 20+14:CCG <> π΄ High Energy Collision 20, 34, 43 202+5:GGC
π· @81 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π° @82 (203+1:CAA) πͺ Opposites β rpsF_gene@7, 18, 60, 64, 84, 89, 96, 103 5+4:GTT <> Opposites :
π· @83 (20+13:CAC) πͺ Opposites β rpsF_gene@70 20+23:GTG <> π΄ High Energy Collision 37, 55, 58, 94 20+13:CAC
π° @84 (3+8:CCT) π Structural Lock Key β rpsF_gene@78, 80, 116 3+7:TTC <> π΄ High Energy Collision 12 3+8:CCT
π· @89 (20+13:CAC) πͺ Opposites β rpsF_gene@70 20+23:GTG <> π΄ High Energy Collision 37, 55, 58, 94 20+13:CAC
π· @93 (204+5:CGC) πͺ Opposites β rpsF_gene@105 204+3:GCG <> π΄π‘ Opposites 13, 24, 41, 44, 79, 86, 107, 109, 113 204+1,204+5:CGC,GAC
π’ @94 (20+22:GTA) πͺ Opposites β rpsF_gene@3, 11 20+2:CAT <> Opposites :
π° @95 (3+7:TTC) πͺπ Opposites + Structural Lock Key β rpsF_gene@12, 35, 93 201+1,3+8:AAG,CCT <> π΄ High Energy Collision 78, 80, 116 3+7:TTC
π’ @96 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π’ @97 (203+2:CAG) πͺ Opposites β rpsF_gene@10 5+6:GTC <> π΄ High Energy Collision 14, 17, 46, 68 203+2:CAG
π’ @98 (20+14:CCG) πͺ Opposites β rpsF_gene@20, 34, 43 202+5:GGC <> π΄ High Energy Collision 19, 50, 67, 101 20+14:CCG
π° @100 (5+7:TCC) β Flow Figure8 β rpsF_gene@77, 92, 97, 120 5+8:ACC <> Flow Figure8 :
π° @110 (204+2:GCA) πͺ Opposites β rpsF_gene@2, 38, 45, 91, 110, 112 20+16:CGT <> π΄ High Energy Collision 32, 57, 99, 117 204+2:GCA
π’ @111 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π° @112 (204+5:CGC) πͺ Opposites β rpsF_gene@105 204+3:GCG <> π΄π‘ Opposites 13, 24, 41, 44, 79, 86, 107, 109, 113 204+1,204+5:CGC,GAC
π° @115 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π’ @117 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsF_gene@14, 17, 42, 46, 68 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 10 5+6:GTC
π· @124 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π· @130 (5+7:TCC) β Flow Figure8 β rpsF_gene@77, 92, 97, 120 5+8:ACC <> Flow Figure8 :
π’ @133 (20+14:CCG) πͺ Opposites β rpsF_gene@20, 34, 43 202+5:GGC <> π΄ High Energy Collision 19, 50, 67, 101 20+14:CCG
π’ @136 (20+23:GTG) πͺ Opposites β rpsF_gene@37, 55, 58, 94 20+13:CAC <> π΄ High Energy Collision 70 20+23:GTG
π· @138 (20+16:CGT) πͺ Opposites β rpsF_gene@32, 57, 99, 117 204+2:GCA <> π΄ High Energy Collision 2, 38, 45, 91, 110, 112 20+16:CGT
π· @139 (204+2:GCA) πͺ Opposites β rpsF_gene@2, 38, 45, 91, 110, 112 20+16:CGT <> π΄ High Energy Collision 32, 57, 99, 117 204+2:GCA
π’ @143 (202+5:GGC) πͺ Opposites β rpsF_gene@19, 50, 67, 101 20+14:CCG <> π΄ High Energy Collision 20, 34, 43 202+5:GGC
π’ @144 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π’ @147 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π’ @150 (203+4:CCA) πͺ Opposites β rpsF_gene@31 20+25:GGT <> Opposites :
π’ @152 (20+5:ATG) πͺ Opposites β rpsF_gene@4, 25, 49, 59 20+8:TAC <> π΄ High Energy Collision 1, 9, 21, 62, 88, 90, 102 20+5:ATG
π’ @153 (5+6:GTC) βπͺ Flow Figure8 + Opposites β rpsF_gene@14, 17, 42, 46, 68 203+2,5+5:CAG,TGG <> π΄ High Energy Collision 10 5+6:GTC
π’ @156 (201+1:AAG) πͺ Opposites β rpsF_gene@78, 80, 116 3+7:TTC <> π΄ High Energy Collision 35, 93, 127 201+1,201+5:AAG,GGG
π’ @157 (20+16:CGT) πͺ Opposites β rpsF_gene@32, 57, 99, 117 204+2:GCA <> π΄ High Energy Collision 2, 38, 45, 91, 110, 112 20+16:CGT
π’ @160 (5+7:TCC) β Flow Figure8 β rpsF_gene@77, 92, 97, 120 5+8:ACC <> Flow Figure8 :
π’ @165 (20+1:CTG) πͺ Opposites β rpsF_gene@13, 41, 107 204+1:GAC <> π΄ High Energy Collision 39, 47, 54, 61, 74 20+1:CTG
π‘ Assembly Insights:
β’ Bond strength: unknown
β’ Coordination type: unknown
No rna features found for partner gene: {partner_sequence['gene_id']}
No rna features found for partner gene: {partner_sequence['gene_id']}
𧬠RNA rrsB_gene (1542 nucleotides)
============================================================
π The RNA landscape...
πΈ Sticky loop 1-8 (8), π Bump-1 26, πΈ Sticky loop 557-562 (6), πΈ Sticky loop 913-920 (8), πΈ Sticky loop 1397-1400 (4), πΈ Sticky loop 1502-1505 (4), π Sticky hub 1530-1542 (13)
π Medium stem 9-25 - (4-pair stem - open loops: πΈ Sticky loop 13-21 (9)
10 rpsE_gene flipped: 37,80,140
11 rpsE_gene normal: 7,82
11 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
21 rpsE_gene normal: 98,133
25 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
25 rpsE_gene normal: 74,117,153
πΈ Sticky loop 13-21 (9) with 43 candidates
13 rpsE_gene flipped: 7,82
13 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
14 rpsE_gene normal: 37,80,140
16 rpsE_gene flipped: 41,142
18 rpsE_gene flipped: 1,64,71,96,111,147,152
18 rpsE_gene normal: 18,21,38,94
19 rpsE_gene normal: 50
19 rpsE_gene flipped: 121
20 rpsE_gene flipped: 57,150
20 rpsE_gene normal: 74,117,153
π Medium stem 27-550 - (4-pair stem - open loops: π Bump-1 31
28 rpsE_gene flipped: 70,77,146,148
29 rpsE_gene flipped: 7,82
29 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
30 rpsE_gene normal: 37,80,140
31 rpsE_gene flipped: 31,33,95
π Medium stem 32-556 - (6-pair stem - open loops: π Bump-1 38, π° Bump-2 404-405, π° Bump-2 498-499, π Bump-1 546
32 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
33 rpsE_gene flipped: 29,54,68,138,157
34 rpsE_gene symmetric: 17,53,59,63,75
36 rpsE_gene flipped: 12,61,97
37 rpsE_gene flipped: 57,150
37 rpsE_gene normal: 74,117,153
38 rpsE_gene normal: 98,133
405 rpsE_gene symmetric: 22,34,92,149
499 rpsE_gene flipped: 2,8,35,99,118,125,154
539 rpsE_gene normal: 32,100,130,160
539 rpsE_gene flipped: 84
541 rpsE_gene normal: 57,150
541 rpsE_gene flipped: 74,117,153
542 rpsE_gene symmetric: 3,83,89
543 rpsE_gene flipped: 58,110,139
543 rpsE_gene normal: 90
544 rpsE_gene normal: 29,54,68,138,157
545 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
546 rpsE_gene normal: 31,33,95
547 rpsE_gene flipped: 2,8,35,99,118,125,154
548 rpsE_gene symmetric: 20,45,69,93,112
549 rpsE_gene normal: 58,110,139
549 rpsE_gene flipped: 90
550 rpsE_gene normal: 7,82
550 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
π° Bump-2 404-405 with 3 candidates
404 rpsE_gene symmetric: 3,83,89
π° Bump-2 498-499 with 3 candidates
498 rpsE_gene normal: 31,33,95
βοΈ Belt 39-403 - (9-pair stem - open loops: πΈ Sticky loop 48-51 (4), πΈ Sticky loop 361-366 (6), π Bump-1 394, π Bump-1 397)
39 rpsE_gene symmetric: 20,45,69,93,112
40 rpsE_gene flipped: 98,133
41 rpsE_gene normal: 98,133
42 rpsE_gene normal: 29,54,68,138,157
43 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
43 rpsE_gene normal: 74,117,153
44 rpsE_gene normal: 32,100,130,160
44 rpsE_gene flipped: 84
45 rpsE_gene normal: 98,133
46 rpsE_gene flipped: 9,40,79,143
47 rpsE_gene flipped: 24,103,131
47 rpsE_gene normal: 31,33,95
358 rpsE_gene flipped: 57,150
358 rpsE_gene normal: 74,117,153
366 rpsE_gene flipped: 70,77,146,148
391 rpsE_gene normal: 29,54,68,138,157
392 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
392 rpsE_gene normal: 74,117,153
393 rpsE_gene flipped: 2,8,35,99,118,125,154
394 rpsE_gene flipped: 9,40,79,143
395 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
395 rpsE_gene flipped: 32,100,130,160
396 rpsE_gene flipped: 1,64,71,96,111,147,152
396 rpsE_gene normal: 18,21,38,94
397 rpsE_gene normal: 50
397 rpsE_gene flipped: 121
398 rpsE_gene flipped: 58,110,139
398 rpsE_gene normal: 90
399 rpsE_gene flipped: 9,40,79,143
400 rpsE_gene normal: 9,40,79,143
401 rpsE_gene symmetric: 17,53,59,63,75
402 rpsE_gene symmetric: 20,45,69,93,112
403 rpsE_gene normal: 58,110,139
403 rpsE_gene flipped: 90
πΈ Sticky loop 48-51 (4) with 13 candidates
48 rpsE_gene normal: 41,142
50 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
πΈ Sticky loop 361-366 (6) with 9 candidates
361 rpsE_gene flipped: 32,100,130,160
361 rpsE_gene normal: 84
362 rpsE_gene flipped: 31,33,95
364 rpsE_gene symmetric: 128
π Short stem 52-357 - 3-pair stem - open loops: π Bump-1 55
52 rpsE_gene symmetric: 136
54 rpsE_gene flipped: 1,64,71,96,111,147,152
54 rpsE_gene normal: 18,21,38,94
55 rpsE_gene normal: 50
55 rpsE_gene flipped: 121
π Short stem 56-360 - 3-pair stem - open loops: π° Bump-2 59-60, πΈ Sticky loop 107-112 (6), π Bump-1 315, π Bump-1 338, π± Sticky-3 351-353
56 rpsE_gene flipped: 58,110,139
56 rpsE_gene normal: 90
57 rpsE_gene normal: 29,54,68,138,157
58 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
60 rpsE_gene flipped: 37,80,140
105 rpsE_gene symmetric: 20,45,69,93,112
106 rpsE_gene flipped: 98,133
112 rpsE_gene normal: 57,150
112 rpsE_gene flipped: 74,117,153
311 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
311 rpsE_gene flipped: 32,100,130,160
312 rpsE_gene symmetric: 136
314 rpsE_gene symmetric: 136
353 rpsE_gene flipped: 2,8,35,99,118,125,154
354 rpsE_gene normal: 29,54,68,138,157
355 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
355 rpsE_gene normal: 74,117,153
356 rpsE_gene flipped: 37,80,140
357 rpsE_gene symmetric: 3,83,89
π° Bump-2 59-60 with 3 candidates
59 rpsE_gene normal: 31,33,95
πΈ Sticky loop 107-112 (6) with 24 candidates
107 rpsE_gene flipped: 32,100,130,160
107 rpsE_gene normal: 84
108 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
108 rpsE_gene flipped: 74,117,153
109 rpsE_gene flipped: 29,54,68,138,157
110 rpsE_gene flipped: 98,133
π± Sticky-3 351-353 with 17 candidates
351 rpsE_gene normal: 29,54,68,138,157
352 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
352 rpsE_gene normal: 74,117,153
π Short stem 61-104 - 3-pair stem - open loops: π° Bump-2 64-65
61 rpsE_gene normal: 12,61,97
63 rpsE_gene normal: 2,8,35,99,118,125,154
65 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π° Bump-2 64-65 with 3 candidates
64 rpsE_gene flipped: 31,33,95
π Short stem 66-106 - 2-pair stem - open loops: π Bump-1 68, π° Bump-2 100-101
66 rpsE_gene flipped: 29,54,68,138,157
67 rpsE_gene flipped: 98,133
68 rpsE_gene normal: 57,150
68 rpsE_gene flipped: 74,117,153
97 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
97 rpsE_gene flipped: 74,117,153
98 rpsE_gene flipped: 29,54,68,138,157
99 rpsE_gene normal: 2,8,35,99,118,125,154
101 rpsE_gene flipped: 37,80,140
102 rpsE_gene symmetric: 3,83,89
103 rpsE_gene flipped: 57,150
103 rpsE_gene normal: 74,117,153
104 rpsE_gene normal: 98,133
π Short stem 69-96 - 2-pair stem - open loops: π° Bump-2 71-72
69 rpsE_gene flipped: 50
69 rpsE_gene normal: 121
π° Bump-2 71-72 with 11 candidates
71 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
βοΈ Belt 73-99 - (10-pair stem - open loops: πΈ Sticky loop 83-86 (4), π Bump-1 94)
73 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
73 rpsE_gene normal: 74,117,153
74 rpsE_gene normal: 32,100,130,160
74 rpsE_gene flipped: 84
75 rpsE_gene flipped: 32,100,130,160
75 rpsE_gene normal: 84
76 rpsE_gene flipped: 31,33,95
77 rpsE_gene normal: 31,33,95
78 rpsE_gene symmetric: 22,92,149
79 rpsE_gene flipped: 31,33,95
80 rpsE_gene normal: 31,33,95
81 rpsE_gene flipped: 2,8,35,99,118,125,154
87 rpsE_gene flipped: 14,84,156
88 rpsE_gene normal: 14,84,156
90 rpsE_gene flipped: 14,84,156
92 rpsE_gene flipped: 7,82
92 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
93 rpsE_gene flipped: 58,110,139
93 rpsE_gene normal: 90
95 rpsE_gene flipped: 12,61,97
96 rpsE_gene normal: 37,80,140
πΈ Sticky loop 83-86 (4) with 27 candidates
83 rpsE_gene flipped: 14,84,156
84 rpsE_gene flipped: 7,82
84 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
85 rpsE_gene flipped: 58,110,139
85 rpsE_gene normal: 90
π Short stem 113-310 - 3-pair stem - open loops: πΈ Sticky loop 116-121 (6), π° Bump-2 287-288
113 rpsE_gene symmetric: 3,83,89
114 rpsE_gene normal: 37,80,140
121 rpsE_gene symmetric: 22,34,92,149
288 rpsE_gene flipped: 2,8,35,99,118,125,154
πΈ Sticky loop 116-121 (6) with 7 candidates
116 rpsE_gene flipped: 37,80,140
117 rpsE_gene flipped: 50
117 rpsE_gene normal: 121
120 rpsE_gene normal: 50
120 rpsE_gene flipped: 121
βοΈ Belt 122-239 - (7-pair stem - open loops: π° Bump-2 129-130, π Bump-1 232)
122 rpsE_gene normal: 12,61,97
124 rpsE_gene flipped: 12,61,97
125 rpsE_gene flipped: 57,150
125 rpsE_gene normal: 74,117,153
127 rpsE_gene flipped: 32,100,130,160
127 rpsE_gene normal: 84
128 rpsE_gene flipped: 31,33,95
130 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
232 rpsE_gene flipped: 9,40,79,143
234 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
234 rpsE_gene flipped: 32,100,130,160
235 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
235 rpsE_gene normal: 74,117,153
236 rpsE_gene symmetric: 22,92,149
238 rpsE_gene normal: 50
238 rpsE_gene flipped: 121
239 rpsE_gene flipped: 57,150
239 rpsE_gene normal: 74,117,153
π Short stem 131-231 - 2-pair stem - open loops: π± Sticky-3 133-135, π° Bump-2 228-229
132 rpsE_gene flipped: 12,61,97
135 rpsE_gene flipped: 24,103,131
135 rpsE_gene normal: 31,33,95
229 rpsE_gene symmetric: 22,34,92,149
230 rpsE_gene symmetric: 3,83,89
231 rpsE_gene flipped: 58,110,139
231 rpsE_gene normal: 90
π± Sticky-3 133-135 with 8 candidates
133 rpsE_gene flipped: 58,110,139
133 rpsE_gene normal: 90
134 rpsE_gene flipped: 9,40,79,143
π° Bump-2 228-229 with 2 candidates
228 rpsE_gene normal: 50
228 rpsE_gene flipped: 121
βοΈ Belt 136-227 - (7-pair stem - open loops: π Bump-1 143, π Bump-1 179, π° Bump-2 196-197, π Bump-1 220)
136 rpsE_gene flipped: 12,61,97
137 rpsE_gene normal: 37,80,140
139 rpsE_gene normal: 50
139 rpsE_gene flipped: 121
140 rpsE_gene flipped: 57,150
140 rpsE_gene normal: 74,117,153
141 rpsE_gene flipped: 32,100,130,160
141 rpsE_gene normal: 84
143 rpsE_gene normal: 32,100,130,160
143 rpsE_gene flipped: 84
179 rpsE_gene symmetric: 128
197 rpsE_gene symmetric: 22,92,149
218 rpsE_gene flipped: 7,82
218 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
219 rpsE_gene flipped: 58,110,139
219 rpsE_gene normal: 90
220 rpsE_gene flipped: 9,40,79,143
221 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
221 rpsE_gene flipped: 32,100,130,160
222 rpsE_gene flipped: 1,64,71,96,111,147,152
222 rpsE_gene normal: 18,21,38,94
223 rpsE_gene flipped: 41,142
225 rpsE_gene flipped: 98,133
226 rpsE_gene flipped: 32,100,130,160
226 rpsE_gene normal: 84
π° Bump-2 196-197 with 3 candidates
196 rpsE_gene normal: 31,33,95
π Short stem 144-178 - 1-pair stem - open loops: π Bump-1 145, π Bump-1 177
177 rpsE_gene normal: 29,54,68,138,157
178 rpsE_gene flipped: 1,64,71,96,111,147,152
178 rpsE_gene normal: 18,21,38,94
π Short stem 146-176 - 2-pair stem - open loops: πΈ Sticky five 148-152, πΈ Sticky loop 169-174 (6)
147 rpsE_gene flipped: 32,100,130,160
147 rpsE_gene normal: 84
174 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
174 rpsE_gene normal: 32,100,130,160
175 rpsE_gene normal: 9,40,79,143
176 rpsE_gene symmetric: 17,53,59,63,75
πΈ Sticky five 148-152 with 12 candidates
149 rpsE_gene symmetric: 128
151 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
πΈ Sticky loop 169-174 (6) with 14 candidates
169 rpsE_gene normal: 41,142
172 rpsE_gene symmetric: 128
173 rpsE_gene normal: 1,64,71,96,111,147,152
173 rpsE_gene flipped: 18,21,38,94
π Medium stem 153-168 - (6-pair stem - open loops: πΈ Sticky loop 159-162 (4)
153 rpsE_gene normal: 41,142
154 rpsE_gene normal: 1,64,71,96,111,147,152
154 rpsE_gene flipped: 18,21,38,94
156 rpsE_gene flipped: 12,61,97
157 rpsE_gene flipped: 57,150
157 rpsE_gene normal: 74,117,153
158 rpsE_gene flipped: 32,100,130,160
158 rpsE_gene normal: 84
162 rpsE_gene flipped: 29,54,68,138,157
163 rpsE_gene flipped: 98,133
164 rpsE_gene normal: 57,150
164 rpsE_gene flipped: 74,117,153
165 rpsE_gene flipped: 50
165 rpsE_gene normal: 121
167 rpsE_gene flipped: 2,8,35,99,118,125,154
πΈ Sticky loop 159-162 (4) with 14 candidates
159 rpsE_gene flipped: 31,33,95
161 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 180-195 - 1-pair stem - open loops: π± Sticky-3 181-183, π Bump-1 194
183 rpsE_gene normal: 58,110,139
183 rpsE_gene flipped: 90
194 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
π± Sticky-3 181-183 with 16 candidates
181 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
182 rpsE_gene flipped: 29,54,68,138,157
π Short stem 184-193 - 3-pair stem - open loops: πΈ Sticky loop 187-190 (4)
184 rpsE_gene normal: 12,61,97
186 rpsE_gene symmetric: 17,53,59,63,75
190 rpsE_gene symmetric: 22,92,149
191 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
191 rpsE_gene flipped: 74,117,153
192 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
192 rpsE_gene normal: 32,100,130,160
193 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
193 rpsE_gene flipped: 32,100,130,160
πΈ Sticky loop 187-190 (4) with 19 candidates
187 rpsE_gene normal: 29,54,68,138,157
188 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
189 rpsE_gene normal: 31,33,95
π Medium stem 198-217 - (6-pair stem - open loops: π° Bump-2 204-205
199 rpsE_gene normal: 32,100,130,160
199 rpsE_gene flipped: 84
203 rpsE_gene flipped: 32,100,130,160
203 rpsE_gene normal: 84
205 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
205 rpsE_gene normal: 32,100,130,160
π° Bump-2 204-205 with 12 candidates
204 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
204 rpsE_gene flipped: 74,117,153
π Short stem 206-219 - 2-pair stem - open loops: πΈ Sticky loop 208-211 (4)
206 rpsE_gene flipped: 24,103,131
206 rpsE_gene normal: 31,33,95
207 rpsE_gene flipped: 14,84,156
212 rpsE_gene normal: 98,133
213 rpsE_gene flipped: 9,40,79,143
214 rpsE_gene flipped: 24,103,131
214 rpsE_gene normal: 31,33,95
217 rpsE_gene flipped: 14,84,156
πΈ Sticky loop 208-211 (4) with 5 candidates
208 rpsE_gene normal: 14,84,156
210 rpsE_gene flipped: 98,133
π Short stem 240-286 - 3-pair stem - open loops: πΈ Sticky loop 243-246 (4), πΈ Sticky loop 278-283 (6)
241 rpsE_gene flipped: 32,100,130,160
241 rpsE_gene normal: 84
246 rpsE_gene flipped: 2,8,35,99,118,125,154
270 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
270 rpsE_gene normal: 32,100,130,160
271 rpsE_gene flipped: 24,103,131
271 rpsE_gene normal: 31,33,95
272 rpsE_gene normal: 41,142
274 rpsE_gene normal: 32,100,130,160
274 rpsE_gene flipped: 84
275 rpsE_gene normal: 98,133
276 rpsE_gene symmetric: 20,45,69,93,112
277 rpsE_gene normal: 2,8,35,99,118,125,154
283 rpsE_gene normal: 24,103,131
283 rpsE_gene flipped: 31,33,95
285 rpsE_gene flipped: 24,103,131
285 rpsE_gene normal: 31,33,95
286 rpsE_gene normal: 41,142
πΈ Sticky loop 243-246 (4) with 8 candidates
243 rpsE_gene flipped: 70,77,146,148
244 rpsE_gene normal: 70,77,146,148
πΈ Sticky loop 278-283 (6) with 26 candidates
278 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
278 rpsE_gene flipped: 74,117,153
279 rpsE_gene flipped: 29,54,68,138,157
280 rpsE_gene normal: 2,8,35,99,118,125,154
282 rpsE_gene flipped: 41,142
π Short stem 247-269 - 3-pair stem - open loops: π° Bump-2 250-251
248 rpsE_gene normal: 41,142
251 rpsE_gene flipped: 50
251 rpsE_gene normal: 121
π° Bump-2 250-251 with 3 candidates
250 rpsE_gene flipped: 37,80,140
βοΈ Belt 252-277 - (8-pair stem - open loops: πΈ Sticky loop 260-266 (7))
253 rpsE_gene normal: 32,100,130,160
253 rpsE_gene flipped: 84
254 rpsE_gene normal: 57,150
254 rpsE_gene flipped: 74,117,153
255 rpsE_gene symmetric: 3,83,89
256 rpsE_gene flipped: 57,150
256 rpsE_gene normal: 74,117,153
259 rpsE_gene normal: 57,150
259 rpsE_gene flipped: 74,117,153
269 rpsE_gene symmetric: 136
πΈ Sticky loop 260-266 (7) with 22 candidates
260 rpsE_gene flipped: 50
260 rpsE_gene normal: 121
262 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
263 rpsE_gene flipped: 29,54,68,138,157
264 rpsE_gene flipped: 98,133
265 rpsE_gene normal: 98,133
βοΈ Belt 289-314 - (8-pair stem - open loops: πΈ Sticky loop 297-300 (4), π± Sticky-3 305-307)
290 rpsE_gene flipped: 12,61,97
291 rpsE_gene flipped: 57,150
291 rpsE_gene normal: 74,117,153
292 rpsE_gene normal: 57,150
292 rpsE_gene flipped: 74,117,153
293 rpsE_gene normal: 12,61,97
295 rpsE_gene flipped: 12,61,97
296 rpsE_gene normal: 37,80,140
300 rpsE_gene normal: 32,100,130,160
300 rpsE_gene flipped: 84
301 rpsE_gene flipped: 32,100,130,160
301 rpsE_gene normal: 84
303 rpsE_gene normal: 50
303 rpsE_gene flipped: 121
304 rpsE_gene normal: 37,80,140
307 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
307 rpsE_gene flipped: 32,100,130,160
308 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
308 rpsE_gene normal: 74,117,153
309 rpsE_gene flipped: 2,8,35,99,118,125,154
310 rpsE_gene flipped: 9,40,79,143
πΈ Sticky loop 297-300 (4) with 3 candidates
298 rpsE_gene symmetric: 22,92,149
π± Sticky-3 305-307 with 31 candidates
305 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
305 rpsE_gene flipped: 74,117,153
306 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
306 rpsE_gene normal: 32,100,130,160
π Medium stem 316-337 - (5-pair stem - open loops: π Sticky hub 321-332 (12)
316 rpsE_gene flipped: 12,61,97
317 rpsE_gene flipped: 57,150
317 rpsE_gene normal: 74,117,153
318 rpsE_gene flipped: 32,100,130,160
318 rpsE_gene normal: 84
319 rpsE_gene flipped: 31,33,95
320 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
332 rpsE_gene normal: 12,61,97
333 rpsE_gene normal: 24,103,131
333 rpsE_gene flipped: 31,33,95
334 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
334 rpsE_gene flipped: 32,100,130,160
335 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
335 rpsE_gene normal: 74,117,153
336 rpsE_gene symmetric: 22,92,149
337 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
337 rpsE_gene flipped: 74,117,153
π Sticky hub 321-332 (12) with 34 candidates
322 rpsE_gene flipped: 12,61,97
323 rpsE_gene normal: 37,80,140
325 rpsE_gene symmetric: 22,92,149
326 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
326 rpsE_gene flipped: 74,117,153
328 rpsE_gene symmetric: 136
329 rpsE_gene flipped: 29,54,68,138,157
330 rpsE_gene flipped: 98,133
331 rpsE_gene normal: 57,150
331 rpsE_gene flipped: 74,117,153
π Medium stem 339-350 - (4-pair stem - open loops: πΈ Sticky loop 343-346 (4)
340 rpsE_gene normal: 24,103,131
340 rpsE_gene flipped: 31,33,95
341 rpsE_gene flipped: 24,103,131
341 rpsE_gene normal: 31,33,95
342 rpsE_gene normal: 41,142
347 rpsE_gene flipped: 32,100,130,160
347 rpsE_gene normal: 84
349 rpsE_gene normal: 32,100,130,160
349 rpsE_gene flipped: 84
350 rpsE_gene normal: 98,133
πΈ Sticky loop 343-346 (4) with 18 candidates
343 rpsE_gene normal: 1,64,71,96,111,147,152
343 rpsE_gene flipped: 18,21,38,94
344 rpsE_gene flipped: 29,54,68,138,157
345 rpsE_gene flipped: 98,133
π Short stem 367-390 - 1-pair stem - open loops: π Bump-1 368
367 rpsE_gene flipped: 7,82
367 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
368 rpsE_gene flipped: 58,110,139
368 rpsE_gene normal: 90
π Short stem 369-393 - 3-pair stem - open loops: π± Sticky-3 372-374, π Bump-1 389
369 rpsE_gene normal: 29,54,68,138,157
370 rpsE_gene symmetric: 136
374 rpsE_gene normal: 50
374 rpsE_gene flipped: 121
389 rpsE_gene normal: 50
389 rpsE_gene flipped: 121
390 rpsE_gene flipped: 58,110,139
390 rpsE_gene normal: 90
π± Sticky-3 372-374 with 11 candidates
372 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
π Medium stem 375-388 - (5-pair stem - open loops: πΈ Sticky loop 380-383 (4)
375 rpsE_gene flipped: 57,150
375 rpsE_gene normal: 74,117,153
377 rpsE_gene normal: 98,133
378 rpsE_gene symmetric: 20,45,69,93,112
379 rpsE_gene symmetric: 17,53,59,63,75
383 rpsE_gene flipped: 2,8,35,99,118,125,154
384 rpsE_gene flipped: 9,40,79,143
385 rpsE_gene flipped: 24,103,131
385 rpsE_gene normal: 31,33,95
386 rpsE_gene flipped: 12,61,97
387 rpsE_gene normal: 37,80,140
πΈ Sticky loop 380-383 (4) with 19 candidates
380 rpsE_gene normal: 29,54,68,138,157
381 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
382 rpsE_gene normal: 31,33,95
π Medium stem 406-436 - (4-pair stem - open loops: πΈ Sticky loop 410-415 (6), πΈ Sticky five 428-432
406 rpsE_gene flipped: 50
406 rpsE_gene normal: 121
408 rpsE_gene normal: 50
408 rpsE_gene flipped: 121
409 rpsE_gene normal: 37,80,140
415 rpsE_gene normal: 32,100,130,160
415 rpsE_gene flipped: 84
432 rpsE_gene flipped: 37,80,140
433 rpsE_gene flipped: 50
433 rpsE_gene normal: 121
434 rpsE_gene normal: 1,64,71,96,111,147,152
434 rpsE_gene flipped: 18,21,38,94
436 rpsE_gene flipped: 14,84,156
πΈ Sticky loop 410-415 (6) with 15 candidates
410 rpsE_gene flipped: 31,33,95
411 rpsE_gene normal: 31,33,95
412 rpsE_gene symmetric: 22,92,149
413 rpsE_gene flipped: 31,33,95
414 rpsE_gene normal: 31,33,95
πΈ Sticky five 428-432 with 5 candidates
428 rpsE_gene flipped: 50
428 rpsE_gene normal: 121
431 rpsE_gene normal: 31,33,95
π Medium stem 416-427 - (4-pair stem - open loops: πΈ Sticky loop 420-423 (4)
416 rpsE_gene normal: 98,133
417 rpsE_gene flipped: 9,40,79,143
418 rpsE_gene flipped: 24,103,131
418 rpsE_gene normal: 31,33,95
419 rpsE_gene flipped: 14,84,156
424 rpsE_gene normal: 57,150
424 rpsE_gene flipped: 74,117,153
425 rpsE_gene normal: 7,82
425 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
426 rpsE_gene flipped: 7,82
426 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
427 rpsE_gene symmetric: 22,34,92,149
πΈ Sticky loop 420-423 (4) with 5 candidates
420 rpsE_gene normal: 14,84,156
422 rpsE_gene flipped: 98,133
π Medium stem 437-497 - (4-pair stem - open loops: π Bump-1 441, π Bump-1 493
438 rpsE_gene normal: 14,84,156
440 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
440 rpsE_gene normal: 74,117,153
441 rpsE_gene flipped: 2,8,35,99,118,125,154
493 rpsE_gene symmetric: 22,92,149
494 rpsE_gene flipped: 31,33,95
495 rpsE_gene normal: 31,33,95
496 rpsE_gene symmetric: 22,92,149
497 rpsE_gene flipped: 31,33,95
π Medium stem 442-492 - (5-pair stem - open loops: π Bump-1 447, π Bump-1 487
442 rpsE_gene symmetric: 20,45,69,93,112
443 rpsE_gene flipped: 98,133
446 rpsE_gene flipped: 32,100,130,160
446 rpsE_gene normal: 84
487 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
487 rpsE_gene normal: 32,100,130,160
489 rpsE_gene normal: 9,40,79,143
490 rpsE_gene symmetric: 17,53,59,63,75
491 rpsE_gene normal: 29,54,68,138,157
492 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
492 rpsE_gene normal: 74,117,153
π Short stem 448-486 - 1-pair stem - open loops: π Bump-1 449, π° Bump-2 484-485
448 rpsE_gene normal: 32,100,130,160
448 rpsE_gene flipped: 84
449 rpsE_gene flipped: 32,100,130,160
449 rpsE_gene normal: 84
485 rpsE_gene normal: 70,77,146,148
486 rpsE_gene normal: 1,64,71,96,111,147,152
486 rpsE_gene flipped: 18,21,38,94
π° Bump-2 484-485 with 20 candidates
484 rpsE_gene normal: 7,82
484 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
π Short stem 450-483 - 1-pair stem - open loops: πΈ Sticky loop 451-454 (4), πΈ Sticky five 478-482
450 rpsE_gene flipped: 31,33,95
454 rpsE_gene flipped: 32,100,130,160
454 rpsE_gene normal: 84
482 rpsE_gene flipped: 29,54,68,138,157
483 rpsE_gene normal: 58,110,139
483 rpsE_gene flipped: 90
πΈ Sticky loop 451-454 (4) with 8 candidates
451 rpsE_gene normal: 31,33,95
452 rpsE_gene normal: 32,100,130,160
452 rpsE_gene flipped: 84
πΈ Sticky five 478-482 with 39 candidates
478 rpsE_gene flipped: 70,77,146,148
479 rpsE_gene flipped: 7,82
479 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
480 rpsE_gene normal: 37,80,140
481 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
481 rpsE_gene flipped: 74,117,153
βοΈ Belt 455-477 - (8-pair stem - open loops: πΈ Sticky loop 463-469 (7))
456 rpsE_gene flipped: 37,80,140
457 rpsE_gene flipped: 50
457 rpsE_gene normal: 121
460 rpsE_gene normal: 31,33,95
461 rpsE_gene flipped: 37,80,140
462 rpsE_gene normal: 7,82
462 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
469 rpsE_gene flipped: 24,103,131
469 rpsE_gene normal: 31,33,95
470 rpsE_gene flipped: 14,84,156
472 rpsE_gene flipped: 7,82
472 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
473 rpsE_gene flipped: 58,110,139
473 rpsE_gene normal: 90
477 rpsE_gene flipped: 1,64,71,96,111,147,152
477 rpsE_gene normal: 18,21,38,94
πΈ Sticky loop 463-469 (7) with 35 candidates
463 rpsE_gene normal: 70,77,146,148
466 rpsE_gene symmetric: 128
467 rpsE_gene normal: 1,64,71,96,111,147,152
467 rpsE_gene flipped: 18,21,38,94
468 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
468 rpsE_gene normal: 32,100,130,160
π Medium stem 500-538 - (5-pair stem - open loops: πΈ Sticky loop 505-510 (6)
500 rpsE_gene normal: 29,54,68,138,157
501 rpsE_gene symmetric: 136
502 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
502 rpsE_gene normal: 32,100,130,160
503 rpsE_gene normal: 9,40,79,143
504 rpsE_gene flipped: 98,133
πΈ Sticky loop 505-510 (6) with 15 candidates
505 rpsE_gene normal: 98,133
507 rpsE_gene normal: 41,142
509 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
βοΈ Belt 511-545 - (7-pair stem - open loops: π± Sticky-3 518-520, πΈ Sticky five 529-533)
512 rpsE_gene normal: 24,103,131
512 rpsE_gene flipped: 31,33,95
513 rpsE_gene normal: 9,40,79,143
514 rpsE_gene normal: 58,110,139
514 rpsE_gene flipped: 90
515 rpsE_gene symmetric: 3,83,89
516 rpsE_gene flipped: 58,110,139
516 rpsE_gene normal: 90
517 rpsE_gene flipped: 9,40,79,143
520 rpsE_gene flipped: 2,8,35,99,118,125,154
533 rpsE_gene symmetric: 128
534 rpsE_gene normal: 1,64,71,96,111,147,152
534 rpsE_gene flipped: 18,21,38,94
535 rpsE_gene flipped: 29,54,68,138,157
536 rpsE_gene flipped: 98,133
537 rpsE_gene flipped: 32,100,130,160
537 rpsE_gene normal: 84
π± Sticky-3 518-520 with 31 candidates
518 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
518 rpsE_gene flipped: 32,100,130,160
519 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
519 rpsE_gene normal: 74,117,153
πΈ Sticky five 529-533 with 7 candidates
529 rpsE_gene normal: 57,150
529 rpsE_gene flipped: 74,117,153
530 rpsE_gene flipped: 50
530 rpsE_gene normal: 121
π Short stem 521-528 - 2-pair stem - open loops: πΈ Sticky loop 523-526 (4)
521 rpsE_gene normal: 29,54,68,138,157
522 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
522 rpsE_gene normal: 74,117,153
526 rpsE_gene symmetric: 17,53,59,63,75
527 rpsE_gene symmetric: 20,45,69,93,112
528 rpsE_gene flipped: 98,133
πΈ Sticky loop 523-526 (4) with 15 candidates
523 rpsE_gene flipped: 2,8,35,99,118,125,154
524 rpsE_gene flipped: 9,40,79,143
525 rpsE_gene normal: 9,40,79,143
π Short stem 563-881 - 1-pair stem - open loops: π± Sticky-3 564-566
π± Sticky-3 564-566 with 8 candidates
564 rpsE_gene flipped: 12,61,97
565 rpsE_gene flipped: 57,150
565 rpsE_gene normal: 74,117,153
π Short stem 567-884 - 3-pair stem - open loops: πΈ Sticky loop 570-576 (7), π Bump-1 765, πΈ Sticky loop 814-820 (7), π Bump-1 880
567 rpsE_gene normal: 98,133
568 rpsE_gene symmetric: 20,45,69,93,112
569 rpsE_gene normal: 58,110,139
569 rpsE_gene flipped: 90
576 rpsE_gene symmetric: 17,53,59,63,75
765 rpsE_gene flipped: 31,33,95
820 rpsE_gene symmetric: 22,34,92,149
880 rpsE_gene symmetric: 17,53,59,63,75
881 rpsE_gene flipped: 9,40,79,143
πΈ Sticky loop 570-576 (7) with 17 candidates
570 rpsE_gene flipped: 50
570 rpsE_gene normal: 121
573 rpsE_gene normal: 31,33,95
574 rpsE_gene flipped: 2,8,35,99,118,125,154
575 rpsE_gene symmetric: 20,45,69,93,112
πΈ Sticky loop 814-820 (7) with 25 candidates
815 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
816 rpsE_gene flipped: 29,54,68,138,157
817 rpsE_gene normal: 2,8,35,99,118,125,154
819 rpsE_gene normal: 50
819 rpsE_gene flipped: 121
π Medium stem 577-764 - (4-pair stem - open loops: π± Sticky-3 581-583, π± Sticky-3 758-760
577 rpsE_gene normal: 29,54,68,138,157
578 rpsE_gene symmetric: 136
579 rpsE_gene flipped: 29,54,68,138,157
580 rpsE_gene symmetric: 17,53,59,63,75
583 rpsE_gene normal: 32,100,130,160
583 rpsE_gene flipped: 84
760 rpsE_gene normal: 57,150
760 rpsE_gene flipped: 74,117,153
761 rpsE_gene symmetric: 3,83,89
762 rpsE_gene flipped: 58,110,139
762 rpsE_gene normal: 90
763 rpsE_gene symmetric: 20,45,69,93,112
764 rpsE_gene normal: 2,8,35,99,118,125,154
π± Sticky-3 581-583 with 17 candidates
581 rpsE_gene normal: 29,54,68,138,157
582 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
582 rpsE_gene normal: 74,117,153
π± Sticky-3 758-760 with 17 candidates
758 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
758 rpsE_gene normal: 74,117,153
759 rpsE_gene normal: 32,100,130,160
759 rpsE_gene flipped: 84
π Short stem 584-756 - 3-pair stem - open loops: π Bump-1 587, π° Bump-2 652-653
584 rpsE_gene normal: 98,133
585 rpsE_gene symmetric: 20,45,69,93,112
586 rpsE_gene flipped: 98,133
587 rpsE_gene normal: 57,150
587 rpsE_gene flipped: 74,117,153
651 rpsE_gene flipped: 14,84,156
653 rpsE_gene normal: 37,80,140
π° Bump-2 652-653 with 20 candidates
652 rpsE_gene flipped: 7,82
652 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
βοΈ Belt 588-649 - (7-pair stem - open loops: π Bump-1 595)
588 rpsE_gene normal: 7,82
588 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
590 rpsE_gene flipped: 7,82
590 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
591 rpsE_gene symmetric: 22,34,92,149
592 rpsE_gene normal: 7,82
592 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
593 rpsE_gene normal: 70,77,146,148
595 rpsE_gene normal: 31,33,95
βοΈ Belt 596-651 - (11-pair stem - open loops: πΈ Sticky five 607-611, π± Sticky-3 629-631, π° Bump-2 641-642)
596 rpsE_gene flipped: 37,80,140
597 rpsE_gene normal: 12,61,97
599 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
599 rpsE_gene normal: 74,117,153
600 rpsE_gene symmetric: 22,92,149
602 rpsE_gene normal: 50
602 rpsE_gene flipped: 121
603 rpsE_gene symmetric: 22,34,92,149
604 rpsE_gene symmetric: 3,83,89
605 rpsE_gene normal: 37,80,140
606 rpsE_gene flipped: 31,33,95
631 rpsE_gene flipped: 12,61,97
632 rpsE_gene flipped: 58,110,139
632 rpsE_gene normal: 90
633 rpsE_gene normal: 29,54,68,138,157
634 rpsE_gene flipped: 1,64,71,96,111,147,152
634 rpsE_gene normal: 18,21,38,94
635 rpsE_gene flipped: 41,142
637 rpsE_gene flipped: 12,61,97
638 rpsE_gene normal: 37,80,140
640 rpsE_gene symmetric: 128
643 rpsE_gene flipped: 12,61,97
644 rpsE_gene flipped: 57,150
644 rpsE_gene normal: 74,117,153
645 rpsE_gene normal: 98,133
646 rpsE_gene normal: 29,54,68,138,157
647 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
648 rpsE_gene normal: 31,33,95
649 rpsE_gene flipped: 2,8,35,99,118,125,154
πΈ Sticky five 607-611 with 8 candidates
609 rpsE_gene flipped: 41,142
610 rpsE_gene normal: 24,103,131
610 rpsE_gene flipped: 31,33,95
π± Sticky-3 629-631 with 11 candidates
629 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π° Bump-2 641-642 with 11 candidates
641 rpsE_gene normal: 1,64,71,96,111,147,152
641 rpsE_gene flipped: 18,21,38,94
π Medium stem 612-628 - (6-pair stem - open loops: πΈ Sticky five 618-622
613 rpsE_gene normal: 9,40,79,143
614 rpsE_gene flipped: 98,133
616 rpsE_gene normal: 98,133
622 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
622 rpsE_gene normal: 32,100,130,160
623 rpsE_gene flipped: 24,103,131
623 rpsE_gene normal: 31,33,95
624 rpsE_gene flipped: 12,61,97
625 rpsE_gene flipped: 57,150
625 rpsE_gene normal: 74,117,153
627 rpsE_gene flipped: 32,100,130,160
627 rpsE_gene normal: 84
628 rpsE_gene flipped: 31,33,95
πΈ Sticky five 618-622 with 22 candidates
620 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
621 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
βοΈ Belt 654-757 - (9-pair stem - open loops: π± Sticky-3 663-665, π° Bump-2 741-742, π Bump-1 747, π° Bump-2 752-753)
655 rpsE_gene flipped: 37,80,140
656 rpsE_gene normal: 12,61,97
660 rpsE_gene normal: 58,110,139
660 rpsE_gene flipped: 90
661 rpsE_gene flipped: 50
661 rpsE_gene normal: 121
665 rpsE_gene normal: 32,100,130,160
665 rpsE_gene flipped: 84
742 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
742 rpsE_gene flipped: 74,117,153
743 rpsE_gene flipped: 29,54,68,138,157
744 rpsE_gene normal: 2,8,35,99,118,125,154
745 rpsE_gene flipped: 31,33,95
746 rpsE_gene normal: 31,33,95
747 rpsE_gene symmetric: 22,92,149
748 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
748 rpsE_gene flipped: 74,117,153
750 rpsE_gene flipped: 12,61,97
751 rpsE_gene normal: 37,80,140
753 rpsE_gene flipped: 29,54,68,138,157
754 rpsE_gene symmetric: 17,53,59,63,75
π± Sticky-3 663-665 with 3 candidates
663 rpsE_gene symmetric: 22,92,149
π° Bump-2 741-742 with 5 candidates
741 rpsE_gene flipped: 32,100,130,160
741 rpsE_gene normal: 84
π° Bump-2 752-753 with 12 candidates
752 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
752 rpsE_gene flipped: 74,117,153
βοΈ Belt 666-740 - (8-pair stem - open loops: π± Sticky-3 674-676, π± Sticky-3 714-716, πΈ Sticky loop 718-724 (7), π Bump-1 733)
670 rpsE_gene normal: 57,150
670 rpsE_gene flipped: 74,117,153
671 rpsE_gene flipped: 50
671 rpsE_gene normal: 121
673 rpsE_gene symmetric: 22,92,149
676 rpsE_gene flipped: 70,77,146,148
716 rpsE_gene symmetric: 128
717 rpsE_gene normal: 1,64,71,96,111,147,152
717 rpsE_gene flipped: 18,21,38,94
724 rpsE_gene normal: 98,133
733 rpsE_gene normal: 98,133
734 rpsE_gene flipped: 9,40,79,143
738 rpsE_gene flipped: 24,103,131
738 rpsE_gene normal: 31,33,95
739 rpsE_gene flipped: 12,61,97
740 rpsE_gene flipped: 57,150
740 rpsE_gene normal: 74,117,153
π± Sticky-3 674-676 with 3 candidates
674 rpsE_gene flipped: 31,33,95
π± Sticky-3 714-716 with 3 candidates
714 rpsE_gene flipped: 31,33,95
πΈ Sticky loop 718-724 (7) with 38 candidates
718 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
718 rpsE_gene normal: 32,100,130,160
719 rpsE_gene normal: 9,40,79,143
720 rpsE_gene flipped: 98,133
721 rpsE_gene normal: 57,150
721 rpsE_gene flipped: 74,117,153
722 rpsE_gene symmetric: 3,83,89
723 rpsE_gene flipped: 57,150
723 rpsE_gene normal: 74,117,153
βοΈ Belt 677-713 - (8-pair stem - open loops: π Bump-1 685, π Bump-1 705)
677 rpsE_gene normal: 14,84,156
678 rpsE_gene normal: 24,103,131
678 rpsE_gene flipped: 31,33,95
679 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
679 rpsE_gene flipped: 32,100,130,160
680 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
680 rpsE_gene normal: 74,117,153
681 rpsE_gene normal: 32,100,130,160
681 rpsE_gene flipped: 84
682 rpsE_gene normal: 57,150
682 rpsE_gene flipped: 74,117,153
683 rpsE_gene symmetric: 3,83,89
684 rpsE_gene symmetric: 22,34,92,149
685 rpsE_gene flipped: 50
685 rpsE_gene normal: 121
706 rpsE_gene flipped: 41,142
708 rpsE_gene flipped: 12,61,97
709 rpsE_gene flipped: 57,150
709 rpsE_gene normal: 74,117,153
710 rpsE_gene flipped: 32,100,130,160
710 rpsE_gene normal: 84
712 rpsE_gene normal: 32,100,130,160
712 rpsE_gene flipped: 84
713 rpsE_gene flipped: 32,100,130,160
713 rpsE_gene normal: 84
π Short stem 686-704 - 1-pair stem - open loops: π Bump-1 687, πΈ Sticky loop 700-703 (4)
687 rpsE_gene flipped: 2,8,35,99,118,125,154
704 rpsE_gene symmetric: 22,92,149
πΈ Sticky loop 700-703 (4) with 5 candidates
700 rpsE_gene flipped: 50
700 rpsE_gene normal: 121
702 rpsE_gene symmetric: 22,92,149
π Short stem 688-699 - 3-pair stem - open loops: πΈ Sticky loop 691-696 (6)
688 rpsE_gene symmetric: 20,45,69,93,112
689 rpsE_gene flipped: 98,133
690 rpsE_gene normal: 57,150
690 rpsE_gene flipped: 74,117,153
696 rpsE_gene normal: 50
696 rpsE_gene flipped: 121
697 rpsE_gene flipped: 58,110,139
697 rpsE_gene normal: 90
698 rpsE_gene symmetric: 20,45,69,93,112
699 rpsE_gene normal: 58,110,139
699 rpsE_gene flipped: 90
πΈ Sticky loop 691-696 (6) with 9 candidates
691 rpsE_gene symmetric: 3,83,89
692 rpsE_gene normal: 37,80,140
693 rpsE_gene flipped: 31,33,95
π Short stem 725-732 - 2-pair stem - open loops: πΈ Sticky loop 727-730 (4)
725 rpsE_gene symmetric: 20,45,69,93,112
726 rpsE_gene normal: 2,8,35,99,118,125,154
730 rpsE_gene normal: 98,133
731 rpsE_gene symmetric: 20,45,69,93,112
732 rpsE_gene flipped: 98,133
πΈ Sticky loop 727-730 (4) with 11 candidates
727 rpsE_gene flipped: 31,33,95
728 rpsE_gene normal: 31,33,95
729 rpsE_gene normal: 32,100,130,160
729 rpsE_gene flipped: 84
π Short stem 766-813 - 1-pair stem - open loops: π° Bump-2 767-768, π° Bump-2 811-812
768 rpsE_gene flipped: 2,8,35,99,118,125,154
810 rpsE_gene normal: 9,40,79,143
812 rpsE_gene flipped: 50
812 rpsE_gene normal: 121
π° Bump-2 767-768 with 3 candidates
767 rpsE_gene normal: 31,33,95
π° Bump-2 811-812 with 4 candidates
811 rpsE_gene normal: 58,110,139
811 rpsE_gene flipped: 90
βοΈ Belt 769-809 - (7-pair stem - open loops: π± Sticky-3 776-778)
769 rpsE_gene symmetric: 20,45,69,93,112
770 rpsE_gene normal: 58,110,139
770 rpsE_gene flipped: 90
771 rpsE_gene symmetric: 3,83,89
772 rpsE_gene flipped: 57,150
772 rpsE_gene normal: 74,117,153
775 rpsE_gene flipped: 32,100,130,160
775 rpsE_gene normal: 84
778 rpsE_gene normal: 29,54,68,138,157
π± Sticky-3 776-778 with 7 candidates
777 rpsE_gene flipped: 2,8,35,99,118,125,154
π Short stem 779-810 - 1-pair stem - open loops: π± Sticky-3 780-782, π± Sticky-3 800-802
779 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
802 rpsE_gene flipped: 37,80,140
803 rpsE_gene normal: 12,61,97
804 rpsE_gene normal: 24,103,131
804 rpsE_gene flipped: 31,33,95
805 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
805 rpsE_gene flipped: 32,100,130,160
806 rpsE_gene symmetric: 136
807 rpsE_gene flipped: 29,54,68,138,157
808 rpsE_gene symmetric: 17,53,59,63,75
809 rpsE_gene flipped: 9,40,79,143
π± Sticky-3 780-782 with 11 candidates
781 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π± Sticky-3 800-802 with 2 candidates
800 rpsE_gene flipped: 50
800 rpsE_gene normal: 121
π Medium stem 783-799 - (4-pair stem - open loops: πΈ Sticky loop 787-795 (9)
783 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
783 rpsE_gene normal: 74,117,153
784 rpsE_gene normal: 32,100,130,160
784 rpsE_gene flipped: 84
785 rpsE_gene flipped: 32,100,130,160
785 rpsE_gene normal: 84
796 rpsE_gene flipped: 24,103,131
796 rpsE_gene normal: 31,33,95
797 rpsE_gene flipped: 12,61,97
798 rpsE_gene flipped: 57,150
798 rpsE_gene normal: 74,117,153
799 rpsE_gene normal: 57,150
799 rpsE_gene flipped: 74,117,153
πΈ Sticky loop 787-795 (9) with 42 candidates
787 rpsE_gene flipped: 70,77,146,148
788 rpsE_gene normal: 70,77,146,148
790 rpsE_gene symmetric: 22,92,149
792 rpsE_gene symmetric: 128
793 rpsE_gene normal: 1,64,71,96,111,147,152
793 rpsE_gene flipped: 18,21,38,94
794 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
794 rpsE_gene normal: 32,100,130,160
βοΈ Belt 821-879 - (7-pair stem - open loops: π Bump-1 828, π± Sticky-3 858-860, πΈ Sticky loop 869-872 (4))
821 rpsE_gene normal: 12,61,97
823 rpsE_gene normal: 2,8,35,99,118,125,154
824 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
824 rpsE_gene flipped: 74,117,153
826 rpsE_gene flipped: 14,84,156
827 rpsE_gene flipped: 7,82
827 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
828 rpsE_gene flipped: 57,150
828 rpsE_gene normal: 74,117,153
860 rpsE_gene flipped: 2,8,35,99,118,125,154
872 rpsE_gene normal: 31,33,95
873 rpsE_gene flipped: 37,80,140
874 rpsE_gene normal: 12,61,97
876 rpsE_gene normal: 2,8,35,99,118,125,154
877 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
877 rpsE_gene flipped: 74,117,153
878 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
878 rpsE_gene normal: 32,100,130,160
879 rpsE_gene normal: 9,40,79,143
π± Sticky-3 858-860 with 5 candidates
858 rpsE_gene flipped: 32,100,130,160
858 rpsE_gene normal: 84
πΈ Sticky loop 869-872 (4) with 24 candidates
869 rpsE_gene normal: 7,82
869 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
870 rpsE_gene normal: 70,77,146,148
βοΈ Belt 829-857 - (12-pair stem - open loops: πΈ Sticky five 841-845)
829 rpsE_gene flipped: 32,100,130,160
829 rpsE_gene normal: 84
831 rpsE_gene normal: 32,100,130,160
831 rpsE_gene flipped: 84
832 rpsE_gene normal: 57,150
832 rpsE_gene flipped: 74,117,153
833 rpsE_gene normal: 7,82
833 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
834 rpsE_gene flipped: 7,82
834 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
835 rpsE_gene symmetric: 22,34,92,149
836 rpsE_gene symmetric: 3,83,89
837 rpsE_gene flipped: 58,110,139
837 rpsE_gene normal: 90
838 rpsE_gene flipped: 9,40,79,143
840 rpsE_gene flipped: 24,103,131
840 rpsE_gene normal: 31,33,95
845 rpsE_gene normal: 32,100,130,160
845 rpsE_gene flipped: 84
846 rpsE_gene normal: 98,133
847 rpsE_gene symmetric: 20,45,69,93,112
848 rpsE_gene normal: 58,110,139
848 rpsE_gene flipped: 90
849 rpsE_gene symmetric: 3,83,89
850 rpsE_gene flipped: 57,150
850 rpsE_gene normal: 74,117,153
851 rpsE_gene normal: 98,133
853 rpsE_gene flipped: 14,84,156
854 rpsE_gene normal: 14,84,156
855 rpsE_gene normal: 24,103,131
855 rpsE_gene flipped: 31,33,95
856 rpsE_gene normal: 9,40,79,143
857 rpsE_gene flipped: 98,133
πΈ Sticky five 841-845 with 26 candidates
841 rpsE_gene flipped: 14,84,156
842 rpsE_gene flipped: 7,82
842 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
843 rpsE_gene normal: 37,80,140
π Short stem 861-868 - 2-pair stem - open loops: πΈ Sticky loop 863-866 (4)
862 rpsE_gene normal: 41,142
866 rpsE_gene symmetric: 17,53,59,63,75
867 rpsE_gene symmetric: 20,45,69,93,112
868 rpsE_gene normal: 58,110,139
868 rpsE_gene flipped: 90
πΈ Sticky loop 863-866 (4) with 16 candidates
864 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
865 rpsE_gene flipped: 29,54,68,138,157
π Short stem 885-912 - 3-pair stem - open loops: π± Sticky-3 888-890, π° Bump-2 908-909
887 rpsE_gene flipped: 32,100,130,160
887 rpsE_gene normal: 84
890 rpsE_gene flipped: 50
890 rpsE_gene normal: 121
912 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
π± Sticky-3 888-890 with 3 candidates
889 rpsE_gene flipped: 37,80,140
π° Bump-2 908-909 with 11 candidates
908 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 891-907 - 1-pair stem - open loops: π° Bump-2 892-893, π Bump-1 906
891 rpsE_gene normal: 1,64,71,96,111,147,152
891 rpsE_gene flipped: 18,21,38,94
893 rpsE_gene flipped: 98,133
π° Bump-2 892-893 with 5 candidates
892 rpsE_gene flipped: 29,54,68,138,157
π Medium stem 894-905 - (4-pair stem - open loops: πΈ Sticky loop 898-901 (4)
894 rpsE_gene normal: 98,133
895 rpsE_gene flipped: 9,40,79,143
896 rpsE_gene normal: 9,40,79,143
897 rpsE_gene symmetric: 17,53,59,63,75
901 rpsE_gene normal: 32,100,130,160
901 rpsE_gene flipped: 84
902 rpsE_gene normal: 57,150
902 rpsE_gene flipped: 74,117,153
903 rpsE_gene normal: 7,82
903 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
904 rpsE_gene normal: 70,77,146,148
πΈ Sticky loop 898-901 (4) with 19 candidates
898 rpsE_gene normal: 29,54,68,138,157
899 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
900 rpsE_gene normal: 31,33,95
π Medium stem 921-1396 - (5-pair stem - open loops: π Bump-1 926, π Bump-1 1394
921 rpsE_gene normal: 37,80,140
922 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
922 rpsE_gene flipped: 74,117,153
923 rpsE_gene flipped: 29,54,68,138,157
924 rpsE_gene flipped: 98,133
1395 rpsE_gene symmetric: 136
βοΈ Belt 927-1393 - (7-pair stem - open loops: π Bump-1 934, π± Sticky-3 1381-1383)
928 rpsE_gene normal: 98,133
929 rpsE_gene flipped: 9,40,79,143
931 rpsE_gene normal: 9,40,79,143
932 rpsE_gene symmetric: 17,53,59,63,75
933 rpsE_gene normal: 29,54,68,138,157
934 rpsE_gene symmetric: 136
1383 rpsE_gene normal: 9,40,79,143
1384 rpsE_gene flipped: 98,133
1386 rpsE_gene normal: 98,133
1387 rpsE_gene flipped: 9,40,79,143
1388 rpsE_gene flipped: 24,103,131
1388 rpsE_gene normal: 31,33,95
1389 rpsE_gene flipped: 14,84,156
1390 rpsE_gene flipped: 7,82
1390 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1391 rpsE_gene symmetric: 22,34,92,149
1392 rpsE_gene flipped: 50
1392 rpsE_gene normal: 121
1393 rpsE_gene normal: 1,64,71,96,111,147,152
1393 rpsE_gene flipped: 18,21,38,94
π± Sticky-3 1381-1383 with 6 candidates
1381 rpsE_gene normal: 24,103,131
1381 rpsE_gene flipped: 31,33,95
π Short stem 935-1380 - 2-pair stem - open loops: π° Bump-2 937-938, π± Sticky-3 1345-1347, πΈ Sticky loop 1375-1378 (4)
936 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
938 rpsE_gene flipped: 2,8,35,99,118,125,154
1347 rpsE_gene flipped: 50
1347 rpsE_gene normal: 121
1378 rpsE_gene normal: 58,110,139
1378 rpsE_gene flipped: 90
1379 rpsE_gene normal: 7,82
1379 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1380 rpsE_gene normal: 14,84,156
π° Bump-2 937-938 with 3 candidates
937 rpsE_gene normal: 31,33,95
π± Sticky-3 1345-1347 with 3 candidates
1346 rpsE_gene flipped: 37,80,140
πΈ Sticky loop 1375-1378 (4) with 17 candidates
1375 rpsE_gene symmetric: 128
1376 rpsE_gene normal: 1,64,71,96,111,147,152
1376 rpsE_gene flipped: 18,21,38,94
1377 rpsE_gene flipped: 29,54,68,138,157
π Medium stem 939-1344 - (5-pair stem - open loops: π° Bump-2 944-945, π Bump-1 1236, π° Bump-2 1338-1339
939 rpsE_gene symmetric: 20,45,69,93,112
940 rpsE_gene flipped: 98,133
941 rpsE_gene normal: 57,150
941 rpsE_gene flipped: 74,117,153
942 rpsE_gene symmetric: 3,83,89
943 rpsE_gene flipped: 57,150
943 rpsE_gene normal: 74,117,153
1340 rpsE_gene flipped: 41,142
1342 rpsE_gene symmetric: 17,53,59,63,75
1344 rpsE_gene normal: 41,142
π° Bump-2 944-945 with 5 candidates
944 rpsE_gene flipped: 32,100,130,160
944 rpsE_gene normal: 84
π° Bump-2 1338-1339 with 3 candidates
1338 rpsE_gene flipped: 31,33,95
βοΈ Belt 946-1235 - (10-pair stem - open loops: πΈ Sticky five 956-960, πΈ Sticky loop 975-983 (9), π± Sticky-3 1222-1224, π Bump-1 1227)
946 rpsE_gene flipped: 2,8,35,99,118,125,154
947 rpsE_gene normal: 29,54,68,138,157
948 rpsE_gene flipped: 1,64,71,96,111,147,152
948 rpsE_gene normal: 18,21,38,94
949 rpsE_gene normal: 50
949 rpsE_gene flipped: 121
950 rpsE_gene symmetric: 22,34,92,149
951 rpsE_gene symmetric: 3,83,89
952 rpsE_gene flipped: 57,150
952 rpsE_gene normal: 74,117,153
953 rpsE_gene normal: 57,150
953 rpsE_gene flipped: 74,117,153
954 rpsE_gene normal: 7,82
954 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
960 rpsE_gene normal: 14,84,156
983 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
983 rpsE_gene normal: 32,100,130,160
1224 rpsE_gene normal: 1,64,71,96,111,147,152
1224 rpsE_gene flipped: 18,21,38,94
1226 rpsE_gene symmetric: 136
1228 rpsE_gene symmetric: 136
1229 rpsE_gene flipped: 29,54,68,138,157
1230 rpsE_gene normal: 58,110,139
1230 rpsE_gene flipped: 90
1231 rpsE_gene symmetric: 3,83,89
1232 rpsE_gene flipped: 58,110,139
1232 rpsE_gene normal: 90
1234 rpsE_gene normal: 41,142
1235 rpsE_gene normal: 1,64,71,96,111,147,152
1235 rpsE_gene flipped: 18,21,38,94
πΈ Sticky five 956-960 with 8 candidates
956 rpsE_gene normal: 70,77,146,148
959 rpsE_gene flipped: 70,77,146,148
πΈ Sticky loop 975-983 (9) with 60 candidates
975 rpsE_gene symmetric: 22,92,149
976 rpsE_gene flipped: 31,33,95
977 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
978 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
978 rpsE_gene normal: 32,100,130,160
979 rpsE_gene flipped: 24,103,131
979 rpsE_gene normal: 31,33,95
980 rpsE_gene flipped: 14,84,156
981 rpsE_gene normal: 70,77,146,148
982 rpsE_gene normal: 1,64,71,96,111,147,152
982 rpsE_gene flipped: 18,21,38,94
π± Sticky-3 1222-1224 with 2 candidates
1223 rpsE_gene normal: 41,142
π Short stem 961-974 - 3-pair stem - open loops: πΈ Sticky loop 964-971 (8)
962 rpsE_gene normal: 2,8,35,99,118,125,154
971 rpsE_gene symmetric: 20,45,69,93,112
972 rpsE_gene normal: 2,8,35,99,118,125,154
973 rpsE_gene flipped: 31,33,95
974 rpsE_gene normal: 31,33,95
πΈ Sticky loop 964-971 (8) with 43 candidates
964 rpsE_gene normal: 50
964 rpsE_gene flipped: 121
965 rpsE_gene flipped: 58,110,139
965 rpsE_gene normal: 90
966 rpsE_gene normal: 29,54,68,138,157
967 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
968 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
969 rpsE_gene flipped: 29,54,68,138,157
970 rpsE_gene symmetric: 17,53,59,63,75
βοΈ Belt 984-1221 - (7-pair stem - open loops: πΈ Sticky loop 991-996 (6), π Bump-1 1045, π± Sticky-3 1212-1214)
984 rpsE_gene flipped: 24,103,131
984 rpsE_gene normal: 31,33,95
985 rpsE_gene flipped: 12,61,97
986 rpsE_gene flipped: 57,150
986 rpsE_gene normal: 74,117,153
987 rpsE_gene normal: 57,150
987 rpsE_gene flipped: 74,117,153
988 rpsE_gene normal: 12,61,97
990 rpsE_gene flipped: 14,84,156
996 rpsE_gene flipped: 41,142
1045 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1045 rpsE_gene normal: 74,117,153
1206 rpsE_gene normal: 98,133
1207 rpsE_gene flipped: 9,40,79,143
1209 rpsE_gene flipped: 24,103,131
1209 rpsE_gene normal: 31,33,95
1210 rpsE_gene flipped: 14,84,156
1211 rpsE_gene normal: 70,77,146,148
1214 rpsE_gene normal: 2,8,35,99,118,125,154
1215 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1215 rpsE_gene flipped: 74,117,153
1216 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1216 rpsE_gene normal: 32,100,130,160
1217 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1217 rpsE_gene flipped: 32,100,130,160
1218 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1218 rpsE_gene normal: 74,117,153
1219 rpsE_gene normal: 32,100,130,160
1219 rpsE_gene flipped: 84
1221 rpsE_gene normal: 98,133
πΈ Sticky loop 991-996 (6) with 46 candidates
991 rpsE_gene flipped: 7,82
991 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
992 rpsE_gene normal: 37,80,140
993 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
993 rpsE_gene flipped: 74,117,153
995 rpsE_gene flipped: 1,64,71,96,111,147,152
995 rpsE_gene normal: 18,21,38,94
π± Sticky-3 1212-1214 with 16 candidates
1212 rpsE_gene normal: 1,64,71,96,111,147,152
1212 rpsE_gene flipped: 18,21,38,94
1213 rpsE_gene flipped: 29,54,68,138,157
βοΈ Belt 997-1044 - (7-pair stem - open loops: π° Bump-2 1004-1005, π Bump-1 1024, π Bump-1 1042)
997 rpsE_gene normal: 24,103,131
997 rpsE_gene flipped: 31,33,95
998 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
998 rpsE_gene flipped: 32,100,130,160
999 rpsE_gene symmetric: 136
1000 rpsE_gene flipped: 29,54,68,138,157
1001 rpsE_gene flipped: 98,133
1002 rpsE_gene flipped: 32,100,130,160
1002 rpsE_gene normal: 84
1003 rpsE_gene flipped: 31,33,95
1005 rpsE_gene flipped: 37,80,140
1024 rpsE_gene symmetric: 3,83,89
1042 rpsE_gene symmetric: 22,92,149
1043 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1043 rpsE_gene flipped: 74,117,153
π° Bump-2 1004-1005 with 3 candidates
1004 rpsE_gene normal: 31,33,95
βοΈ Belt 1006-1023 - (7-pair stem - open loops: πΈ Sticky loop 1013-1016 (4))
1006 rpsE_gene normal: 7,82
1006 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1009 rpsE_gene normal: 14,84,156
1011 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1011 rpsE_gene normal: 74,117,153
1012 rpsE_gene symmetric: 22,92,149
1016 rpsE_gene normal: 50
1016 rpsE_gene flipped: 121
1017 rpsE_gene normal: 37,80,140
1019 rpsE_gene symmetric: 22,92,149
1020 rpsE_gene flipped: 31,33,95
1022 rpsE_gene normal: 50
1022 rpsE_gene flipped: 121
1023 rpsE_gene symmetric: 22,34,92,149
πΈ Sticky loop 1013-1016 (4) with 3 candidates
1014 rpsE_gene symmetric: 22,92,149
π Short stem 1025-1041 - 1-pair stem - open loops: π Bump-1 1026, π Bump-1 1035
1025 rpsE_gene flipped: 58,110,139
1025 rpsE_gene normal: 90
1026 rpsE_gene flipped: 9,40,79,143
1035 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
1036 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1036 rpsE_gene normal: 32,100,130,160
1037 rpsE_gene normal: 9,40,79,143
1038 rpsE_gene normal: 58,110,139
1038 rpsE_gene flipped: 90
1039 rpsE_gene symmetric: 3,83,89
1040 rpsE_gene normal: 37,80,140
π Short stem 1027-1034 - 2-pair stem - open loops: πΈ Sticky loop 1029-1032 (4)
1027 rpsE_gene flipped: 24,103,131
1027 rpsE_gene normal: 31,33,95
1028 rpsE_gene flipped: 14,84,156
1033 rpsE_gene flipped: 32,100,130,160
1033 rpsE_gene normal: 84
1034 rpsE_gene flipped: 31,33,95
πΈ Sticky loop 1029-1032 (4) with 5 candidates
1029 rpsE_gene normal: 14,84,156
1031 rpsE_gene flipped: 98,133
π Short stem 1046-1205 - 3-pair stem - open loops: π Bump-1 1049
1046 rpsE_gene normal: 32,100,130,160
1046 rpsE_gene flipped: 84
1047 rpsE_gene normal: 57,150
1047 rpsE_gene flipped: 74,117,153
1048 rpsE_gene symmetric: 3,83,89
1049 rpsE_gene flipped: 58,110,139
1049 rpsE_gene normal: 90
π Medium stem 1050-1209 - (4-pair stem - open loops: π° Bump-2 1054-1055
1051 rpsE_gene flipped: 12,61,97
1052 rpsE_gene flipped: 58,110,139
1052 rpsE_gene normal: 90
1053 rpsE_gene normal: 29,54,68,138,157
1055 rpsE_gene normal: 50
1055 rpsE_gene flipped: 121
π° Bump-2 1054-1055 with 11 candidates
1054 rpsE_gene flipped: 1,64,71,96,111,147,152
1054 rpsE_gene normal: 18,21,38,94
π Medium stem 1056-1211 - (6-pair stem - open loops: π Bump-1 1062, π Bump-1 1194, π Bump-1 1196, π± Sticky-3 1200-1202
1056 rpsE_gene flipped: 57,150
1056 rpsE_gene normal: 74,117,153
1057 rpsE_gene normal: 98,133
1059 rpsE_gene flipped: 12,61,97
1060 rpsE_gene symmetric: 22,34,92,149
1061 rpsE_gene normal: 12,61,97
1195 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1196 rpsE_gene normal: 31,33,95
1197 rpsE_gene flipped: 37,80,140
1198 rpsE_gene normal: 12,61,97
1203 rpsE_gene flipped: 1,64,71,96,111,147,152
1203 rpsE_gene normal: 18,21,38,94
1204 rpsE_gene normal: 50
1204 rpsE_gene flipped: 121
1205 rpsE_gene flipped: 57,150
1205 rpsE_gene normal: 74,117,153
π± Sticky-3 1200-1202 with 13 candidates
1200 rpsE_gene flipped: 1,64,71,96,111,147,152
1200 rpsE_gene normal: 18,21,38,94
1201 rpsE_gene flipped: 41,142
π Short stem 1063-1193 - 2-pair stem - open loops: π± Sticky-3 1065-1067, πΈ Sticky five 1108-1112, πΈ Sticky loop 1188-1191 (4)
1063 rpsE_gene normal: 58,110,139
1063 rpsE_gene flipped: 90
1064 rpsE_gene normal: 12,61,97
1067 rpsE_gene flipped: 2,8,35,99,118,125,154
1191 rpsE_gene flipped: 29,54,68,138,157
1192 rpsE_gene normal: 58,110,139
1192 rpsE_gene flipped: 90
1193 rpsE_gene normal: 12,61,97
π± Sticky-3 1065-1067 with 12 candidates
1066 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1066 rpsE_gene normal: 74,117,153
πΈ Sticky five 1108-1112 with 46 candidates
1108 rpsE_gene normal: 29,54,68,138,157
1109 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1110 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
1111 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1111 rpsE_gene normal: 32,100,130,160
πΈ Sticky loop 1188-1191 (4) with 17 candidates
1188 rpsE_gene normal: 50
1188 rpsE_gene flipped: 121
1189 rpsE_gene normal: 37,80,140
1190 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1190 rpsE_gene flipped: 74,117,153
βοΈ Belt 1068-1107 - (9-pair stem - open loops: πΈ Sticky loop 1077-1080 (4), π° Bump-2 1084-1085, π° Bump-2 1100-1101)
1071 rpsE_gene normal: 58,110,139
1071 rpsE_gene flipped: 90
1072 rpsE_gene symmetric: 3,83,89
1073 rpsE_gene symmetric: 22,34,92,149
1074 rpsE_gene normal: 7,82
1074 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1075 rpsE_gene flipped: 7,82
1075 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1076 rpsE_gene symmetric: 22,34,92,149
1082 rpsE_gene normal: 50
1082 rpsE_gene flipped: 121
1083 rpsE_gene symmetric: 22,34,92,149
1085 rpsE_gene flipped: 7,82
1085 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1101 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
1102 rpsE_gene flipped: 29,54,68,138,157
1103 rpsE_gene normal: 2,8,35,99,118,125,154
1105 rpsE_gene flipped: 2,8,35,99,118,125,154
1106 rpsE_gene symmetric: 20,45,69,93,112
1107 rpsE_gene symmetric: 17,53,59,63,75
πΈ Sticky loop 1077-1080 (4) with 9 candidates
1077 rpsE_gene symmetric: 3,83,89
1078 rpsE_gene normal: 37,80,140
1079 rpsE_gene flipped: 31,33,95
π° Bump-2 1084-1085 with 20 candidates
1084 rpsE_gene normal: 7,82
1084 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
π° Bump-2 1100-1101 with 11 candidates
1100 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
π Medium stem 1086-1099 - (4-pair stem - open loops: πΈ Sticky loop 1090-1095 (6)
1086 rpsE_gene flipped: 57,150
1086 rpsE_gene normal: 74,117,153
1088 rpsE_gene normal: 57,150
1088 rpsE_gene flipped: 74,117,153
1089 rpsE_gene normal: 7,82
1089 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1095 rpsE_gene normal: 24,103,131
1095 rpsE_gene flipped: 31,33,95
1097 rpsE_gene normal: 9,40,79,143
1098 rpsE_gene symmetric: 17,53,59,63,75
1099 rpsE_gene normal: 29,54,68,138,157
πΈ Sticky loop 1090-1095 (6) with 13 candidates
1090 rpsE_gene normal: 70,77,146,148
1092 rpsE_gene normal: 31,33,95
1093 rpsE_gene flipped: 37,80,140
1094 rpsE_gene normal: 12,61,97
βοΈ Belt 1113-1187 - (12-pair stem - open loops: π Bump-1 1125, π° Bump-2 1147-1148, π° Bump-2 1156-1157, π Bump-1 1182)
1113 rpsE_gene flipped: 24,103,131
1113 rpsE_gene normal: 31,33,95
1114 rpsE_gene flipped: 14,84,156
1115 rpsE_gene normal: 70,77,146,148
1117 rpsE_gene flipped: 41,142
1118 rpsE_gene normal: 24,103,131
1118 rpsE_gene flipped: 31,33,95
1119 rpsE_gene flipped: 24,103,131
1119 rpsE_gene normal: 31,33,95
1120 rpsE_gene flipped: 14,84,156
1122 rpsE_gene flipped: 7,82
1122 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1123 rpsE_gene symmetric: 22,34,92,149
1124 rpsE_gene normal: 7,82
1124 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1125 rpsE_gene flipped: 7,82
1125 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1149 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1151 rpsE_gene normal: 31,33,95
1152 rpsE_gene normal: 32,100,130,160
1152 rpsE_gene flipped: 84
1153 rpsE_gene flipped: 32,100,130,160
1153 rpsE_gene normal: 84
1155 rpsE_gene symmetric: 22,92,149
1182 rpsE_gene symmetric: 3,83,89
1183 rpsE_gene flipped: 57,150
1183 rpsE_gene normal: 74,117,153
1186 rpsE_gene flipped: 32,100,130,160
1186 rpsE_gene normal: 84
π° Bump-2 1156-1157 with 12 candidates
1156 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1156 rpsE_gene flipped: 74,117,153
π Short stem 1126-1146 - 1-pair stem - open loops: π Bump-1 1127, π Bump-1 1145
1126 rpsE_gene flipped: 58,110,139
1126 rpsE_gene normal: 90
1127 rpsE_gene flipped: 9,40,79,143
1143 rpsE_gene flipped: 32,100,130,160
1143 rpsE_gene normal: 84
1144 rpsE_gene flipped: 31,33,95
1145 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 1128-1141 - 2-pair stem - open loops: π° Bump-2 1130-1131
1128 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1128 rpsE_gene flipped: 32,100,130,160
1129 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1129 rpsE_gene normal: 74,117,153
1131 rpsE_gene symmetric: 20,45,69,93,112
π° Bump-2 1130-1131 with 7 candidates
1130 rpsE_gene flipped: 2,8,35,99,118,125,154
π Short stem 1132-1144 - 3-pair stem - open loops: πΈ Sticky five 1135-1139
1132 rpsE_gene flipped: 98,133
1133 rpsE_gene normal: 57,150
1133 rpsE_gene flipped: 74,117,153
1134 rpsE_gene normal: 12,61,97
1139 rpsE_gene flipped: 9,40,79,143
1140 rpsE_gene normal: 9,40,79,143
1141 rpsE_gene flipped: 98,133
πΈ Sticky five 1135-1139 with 14 candidates
1135 rpsE_gene normal: 24,103,131
1135 rpsE_gene flipped: 31,33,95
1136 rpsE_gene normal: 9,40,79,143
1137 rpsE_gene flipped: 98,133
1138 rpsE_gene normal: 98,133
π Short stem 1158-1181 - 1-pair stem - open loops: π° Bump-2 1159-1160, πΈ Sticky five 1176-1180
1158 rpsE_gene flipped: 12,61,97
1160 rpsE_gene flipped: 9,40,79,143
1180 rpsE_gene normal: 32,100,130,160
1180 rpsE_gene flipped: 84
1181 rpsE_gene normal: 57,150
1181 rpsE_gene flipped: 74,117,153
π° Bump-2 1159-1160 with 4 candidates
1159 rpsE_gene flipped: 58,110,139
1159 rpsE_gene normal: 90
πΈ Sticky five 1176-1180 with 16 candidates
1176 rpsE_gene normal: 32,100,130,160
1176 rpsE_gene flipped: 84
1177 rpsE_gene flipped: 32,100,130,160
1177 rpsE_gene normal: 84
1178 rpsE_gene flipped: 31,33,95
1179 rpsE_gene normal: 31,33,95
π Medium stem 1161-1175 - (5-pair stem - open loops: πΈ Sticky five 1166-1170
1161 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1161 rpsE_gene flipped: 32,100,130,160
1162 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1162 rpsE_gene normal: 74,117,153
1163 rpsE_gene flipped: 37,80,140
1164 rpsE_gene symmetric: 3,83,89
1165 rpsE_gene normal: 37,80,140
1170 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
1172 rpsE_gene flipped: 12,61,97
1173 rpsE_gene flipped: 57,150
1173 rpsE_gene normal: 74,117,153
1174 rpsE_gene flipped: 32,100,130,160
1174 rpsE_gene normal: 84
πΈ Sticky five 1166-1170 with 1 candidates
1167 rpsE_gene symmetric: 128
π Short stem 1237-1337 - 2-pair stem - open loops: π° Bump-2 1239-1240, πΈ Sticky loop 1297-1300 (4), π Bump-1 1302, π° Bump-2 1335-1336
1237 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1240 rpsE_gene flipped: 57,150
1240 rpsE_gene normal: 74,117,153
1300 rpsE_gene normal: 12,61,97
1301 rpsE_gene normal: 24,103,131
1301 rpsE_gene flipped: 31,33,95
1302 rpsE_gene normal: 9,40,79,143
1336 rpsE_gene flipped: 98,133
1337 rpsE_gene flipped: 32,100,130,160
1337 rpsE_gene normal: 84
π° Bump-2 1239-1240 with 2 candidates
1239 rpsE_gene normal: 50
1239 rpsE_gene flipped: 121
πΈ Sticky loop 1297-1300 (4) with 5 candidates
1297 rpsE_gene flipped: 50
1297 rpsE_gene normal: 121
1299 rpsE_gene flipped: 37,80,140
βοΈ Belt 1241-1296 - (7-pair stem - open loops: πΈ Sticky five 1248-1252, πΈ Sticky five 1285-1289)
1241 rpsE_gene normal: 98,133
1242 rpsE_gene symmetric: 20,45,69,93,112
1243 rpsE_gene symmetric: 17,53,59,63,75
1244 rpsE_gene normal: 29,54,68,138,157
1245 rpsE_gene flipped: 1,64,71,96,111,147,152
1245 rpsE_gene normal: 18,21,38,94
1246 rpsE_gene symmetric: 128
1247 rpsE_gene normal: 1,64,71,96,111,147,152
1247 rpsE_gene flipped: 18,21,38,94
1252 rpsE_gene symmetric: 22,92,149
1289 rpsE_gene flipped: 37,80,140
1290 rpsE_gene symmetric: 3,83,89
1291 rpsE_gene flipped: 58,110,139
1291 rpsE_gene normal: 90
1292 rpsE_gene symmetric: 20,45,69,93,112
1293 rpsE_gene normal: 58,110,139
1293 rpsE_gene flipped: 90
1294 rpsE_gene normal: 12,61,97
1296 rpsE_gene normal: 58,110,139
1296 rpsE_gene flipped: 90
πΈ Sticky five 1248-1252 with 14 candidates
1249 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1251 rpsE_gene normal: 31,33,95
πΈ Sticky five 1285-1289 with 4 candidates
1285 rpsE_gene symmetric: 128
1288 rpsE_gene normal: 31,33,95
π Short stem 1253-1284 - 3-pair stem - open loops: π° Bump-2 1256-1257, πΈ Sticky loop 1278-1281 (4)
1254 rpsE_gene symmetric: 22,92,149
1255 rpsE_gene flipped: 31,33,95
1257 rpsE_gene flipped: 2,8,35,99,118,125,154
1281 rpsE_gene flipped: 24,103,131
1281 rpsE_gene normal: 31,33,95
1284 rpsE_gene flipped: 1,64,71,96,111,147,152
1284 rpsE_gene normal: 18,21,38,94
π° Bump-2 1256-1257 with 3 candidates
1256 rpsE_gene normal: 31,33,95
πΈ Sticky loop 1278-1281 (4) with 36 candidates
1278 rpsE_gene flipped: 32,100,130,160
1278 rpsE_gene normal: 84
1279 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1279 rpsE_gene flipped: 74,117,153
1280 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1280 rpsE_gene normal: 32,100,130,160
π Short stem 1258-1277 - 2-pair stem - open loops: π± Sticky-3 1260-1262, π± Sticky-3 1273-1275
1258 rpsE_gene symmetric: 20,45,69,93,112
1259 rpsE_gene normal: 2,8,35,99,118,125,154
1262 rpsE_gene flipped: 24,103,131
1262 rpsE_gene normal: 31,33,95
1275 rpsE_gene flipped: 2,8,35,99,118,125,154
1276 rpsE_gene symmetric: 20,45,69,93,112
1277 rpsE_gene flipped: 98,133
π± Sticky-3 1260-1262 with 31 candidates
1260 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1260 rpsE_gene flipped: 74,117,153
1261 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1261 rpsE_gene normal: 32,100,130,160
π± Sticky-3 1273-1275 with 14 candidates
1273 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1274 rpsE_gene normal: 31,33,95
π Short stem 1263-1272 - 3-pair stem - open loops: πΈ Sticky loop 1266-1269 (4)
1265 rpsE_gene symmetric: 17,53,59,63,75
1269 rpsE_gene symmetric: 22,92,149
1271 rpsE_gene flipped: 2,8,35,99,118,125,154
1272 rpsE_gene normal: 29,54,68,138,157
πΈ Sticky loop 1266-1269 (4) with 12 candidates
1266 rpsE_gene symmetric: 20,45,69,93,112
1267 rpsE_gene normal: 2,8,35,99,118,125,154
π Short stem 1303-1334 - 1-pair stem - open loops: πΈ Sticky loop 1304-1307 (4), πΈ Sticky loop 1330-1333 (4)
1303 rpsE_gene flipped: 98,133
1307 rpsE_gene flipped: 7,82
1307 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1333 rpsE_gene flipped: 37,80,140
1334 rpsE_gene normal: 12,61,97
πΈ Sticky loop 1304-1307 (4) with 9 candidates
1304 rpsE_gene flipped: 32,100,130,160
1304 rpsE_gene normal: 84
1306 rpsE_gene flipped: 70,77,146,148
πΈ Sticky loop 1330-1333 (4) with 9 candidates
1330 rpsE_gene normal: 37,80,140
1331 rpsE_gene flipped: 31,33,95
1332 rpsE_gene normal: 31,33,95
βοΈ Belt 1308-1329 - (7-pair stem - open loops: πΈ Sticky loop 1315-1322 (8))
1308 rpsE_gene flipped: 57,150
1308 rpsE_gene normal: 74,117,153
1309 rpsE_gene flipped: 32,100,130,160
1309 rpsE_gene normal: 84
1311 rpsE_gene flipped: 37,80,140
1312 rpsE_gene normal: 12,61,97
1314 rpsE_gene flipped: 12,61,97
1322 rpsE_gene normal: 2,8,35,99,118,125,154
1323 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1323 rpsE_gene flipped: 74,117,153
1326 rpsE_gene normal: 24,103,131
1326 rpsE_gene flipped: 31,33,95
1327 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1327 rpsE_gene flipped: 32,100,130,160
1328 rpsE_gene flipped: 1,64,71,96,111,147,152
1328 rpsE_gene normal: 18,21,38,94
1329 rpsE_gene normal: 50
1329 rpsE_gene flipped: 121
πΈ Sticky loop 1315-1322 (8) with 31 candidates
1315 rpsE_gene flipped: 58,110,139
1315 rpsE_gene normal: 90
1316 rpsE_gene normal: 29,54,68,138,157
1317 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1318 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 1348-1374 - 1-pair stem - open loops: π Bump-1 1349, π Bump-1 1373
1373 rpsE_gene flipped: 31,33,95
βοΈ Belt 1350-1372 - (7-pair stem - open loops: πΈ Sticky loop 1357-1365 (9))
1350 rpsE_gene flipped: 41,142
1352 rpsE_gene normal: 58,110,139
1352 rpsE_gene flipped: 90
1353 rpsE_gene symmetric: 3,83,89
1354 rpsE_gene flipped: 57,150
1354 rpsE_gene normal: 74,117,153
1355 rpsE_gene flipped: 32,100,130,160
1355 rpsE_gene normal: 84
1365 rpsE_gene flipped: 9,40,79,143
1366 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1366 rpsE_gene flipped: 32,100,130,160
1367 rpsE_gene symmetric: 136
1368 rpsE_gene flipped: 29,54,68,138,157
1369 rpsE_gene flipped: 98,133
1370 rpsE_gene normal: 57,150
1370 rpsE_gene flipped: 74,117,153
1371 rpsE_gene symmetric: 3,83,89
1372 rpsE_gene normal: 37,80,140
πΈ Sticky loop 1357-1365 (9) with 26 candidates
1357 rpsE_gene flipped: 41,142
1359 rpsE_gene flipped: 11,15,36,76,81,115,124,144,165
1359 rpsE_gene normal: 74,117,153
1360 rpsE_gene symmetric: 22,92,149
1361 rpsE_gene flipped: 31,33,95
1363 rpsE_gene normal: 50
1363 rpsE_gene flipped: 121
1364 rpsE_gene flipped: 58,110,139
1364 rpsE_gene normal: 90
π Short stem 1401-1501 - 1-pair stem - open loops: π° Bump-2 1402-1403, π± Sticky-3 1498-1500
1401 rpsE_gene flipped: 9,40,79,143
1403 rpsE_gene normal: 9,40,79,143
1501 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
π± Sticky-3 1498-1500 with 11 candidates
1499 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 1404-1497 - 2-pair stem - open loops: π Bump-1 1406, π Bump-1 1495
1404 rpsE_gene normal: 58,110,139
1404 rpsE_gene flipped: 90
1405 rpsE_gene normal: 12,61,97
1496 rpsE_gene normal: 58,110,139
1496 rpsE_gene flipped: 90
1497 rpsE_gene flipped: 50
1497 rpsE_gene normal: 121
π Short stem 1407-1494 - 1-pair stem - open loops: π Bump-1 1408, π° Bump-2 1492-1493
1407 rpsE_gene symmetric: 136
1493 rpsE_gene flipped: 37,80,140
1494 rpsE_gene normal: 12,61,97
π° Bump-2 1492-1493 with 3 candidates
1492 rpsE_gene normal: 31,33,95
π Medium stem 1409-1491 - (4-pair stem - open loops: π Bump-1 1413, π Bump-1 1487
1409 rpsE_gene symmetric: 136
1410 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1410 rpsE_gene normal: 32,100,130,160
1411 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1411 rpsE_gene flipped: 32,100,130,160
1412 rpsE_gene flipped: 1,64,71,96,111,147,152
1412 rpsE_gene normal: 18,21,38,94
1413 rpsE_gene normal: 50
1413 rpsE_gene flipped: 121
1488 rpsE_gene normal: 57,150
1488 rpsE_gene flipped: 74,117,153
1489 rpsE_gene symmetric: 3,83,89
1490 rpsE_gene normal: 37,80,140
1491 rpsE_gene flipped: 31,33,95
π Short stem 1414-1486 - 3-pair stem - open loops: π° Bump-2 1417-1418, π° Bump-2 1482-1483
1414 rpsE_gene flipped: 57,150
1414 rpsE_gene normal: 74,117,153
1416 rpsE_gene flipped: 32,100,130,160
1416 rpsE_gene normal: 84
1418 rpsE_gene flipped: 37,80,140
1484 rpsE_gene flipped: 12,61,97
1485 rpsE_gene flipped: 57,150
1485 rpsE_gene normal: 74,117,153
π° Bump-2 1482-1483 with 12 candidates
1482 rpsE_gene normal: 11,15,36,76,81,115,124,144,165
1482 rpsE_gene flipped: 74,117,153
βοΈ Belt 1419-1481 - (12-pair stem - open loops: πΈ Sticky loop 1431-1434 (4), π± Sticky-3 1467-1469)
1419 rpsE_gene symmetric: 3,83,89
1420 rpsE_gene flipped: 57,150
1420 rpsE_gene normal: 74,117,153
1422 rpsE_gene normal: 57,150
1422 rpsE_gene flipped: 74,117,153
1423 rpsE_gene normal: 7,82
1423 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1424 rpsE_gene flipped: 7,82
1424 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1425 rpsE_gene flipped: 58,110,139
1425 rpsE_gene normal: 90
1426 rpsE_gene normal: 29,54,68,138,157
1427 rpsE_gene normal: 25,39,46,56,85,88,114,120,123,137,161
1430 rpsE_gene normal: 31,33,95
1434 rpsE_gene flipped: 37,80,140
1463 rpsE_gene normal: 70,77,146,148
1464 rpsE_gene normal: 1,64,71,96,111,147,152
1464 rpsE_gene flipped: 18,21,38,94
1465 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1465 rpsE_gene normal: 32,100,130,160
1466 rpsE_gene normal: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1466 rpsE_gene flipped: 32,100,130,160
1469 rpsE_gene flipped: 14,84,156
1471 rpsE_gene flipped: 7,82
1471 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1472 rpsE_gene symmetric: 22,34,92,149
1473 rpsE_gene symmetric: 3,83,89
1474 rpsE_gene normal: 37,80,140
1476 rpsE_gene flipped: 70,77,146,148
1477 rpsE_gene normal: 14,84,156
1479 rpsE_gene flipped: 1,64,71,96,111,147,152
1479 rpsE_gene normal: 18,21,38,94
1480 rpsE_gene normal: 50
1480 rpsE_gene flipped: 121
1481 rpsE_gene normal: 37,80,140
πΈ Sticky loop 1431-1434 (4) with 9 candidates
1431 rpsE_gene symmetric: 22,92,149
1432 rpsE_gene flipped: 31,33,95
1433 rpsE_gene normal: 31,33,95
π± Sticky-3 1467-1469 with 1 candidates
1467 rpsE_gene symmetric: 136
π Medium stem 1435-1462 - (6-pair stem - open loops: π Bump-1 1441
1435 rpsE_gene flipped: 50
1435 rpsE_gene normal: 121
1437 rpsE_gene normal: 32,100,130,160
1437 rpsE_gene flipped: 84
1438 rpsE_gene normal: 57,150
1438 rpsE_gene flipped: 74,117,153
1439 rpsE_gene flipped: 50
1439 rpsE_gene normal: 121
1441 rpsE_gene flipped: 2,8,35,99,118,125,154
π Medium stem 1442-1466 - (4-pair stem - open loops: π° Bump-2 1446-1447, π Bump-1 1456
1443 rpsE_gene flipped: 14,84,156
1444 rpsE_gene normal: 70,77,146,148
1447 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1447 rpsE_gene normal: 32,100,130,160
1456 rpsE_gene normal: 32,100,130,160
1456 rpsE_gene flipped: 84
1458 rpsE_gene normal: 98,133
1459 rpsE_gene symmetric: 20,45,69,93,112
1460 rpsE_gene symmetric: 17,53,59,63,75
1462 rpsE_gene flipped: 14,84,156
π° Bump-2 1446-1447 with 11 candidates
1446 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
π Short stem 1448-1455 - 2-pair stem - open loops: πΈ Sticky loop 1450-1453 (4)
1448 rpsE_gene flipped: 24,103,131
1448 rpsE_gene normal: 31,33,95
1449 rpsE_gene flipped: 14,84,156
1454 rpsE_gene flipped: 32,100,130,160
1454 rpsE_gene normal: 84
πΈ Sticky loop 1450-1453 (4) with 5 candidates
1450 rpsE_gene normal: 14,84,156
1452 rpsE_gene flipped: 98,133
βοΈ Belt 1506-1529 - (10-pair stem - open loops: πΈ Sticky loop 1516-1519 (4))
1507 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
1508 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1508 rpsE_gene normal: 32,100,130,160
1509 rpsE_gene normal: 9,40,79,143
1510 rpsE_gene normal: 58,110,139
1510 rpsE_gene flipped: 90
1511 rpsE_gene flipped: 50
1511 rpsE_gene normal: 121
1513 rpsE_gene normal: 32,100,130,160
1513 rpsE_gene flipped: 84
1519 rpsE_gene flipped: 27,28,42,44,47,49,51,87,91,102,104,108,109,129,158
1519 rpsE_gene normal: 32,100,130,160
1520 rpsE_gene flipped: 24,103,131
1520 rpsE_gene normal: 31,33,95
1521 rpsE_gene flipped: 12,61,97
1522 rpsE_gene flipped: 58,110,139
1522 rpsE_gene normal: 90
1523 rpsE_gene symmetric: 20,45,69,93,112
1524 rpsE_gene flipped: 98,133
1525 rpsE_gene normal: 57,150
1525 rpsE_gene flipped: 74,117,153
1526 rpsE_gene normal: 7,82
1526 rpsE_gene flipped: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1527 rpsE_gene flipped: 7,82
1527 rpsE_gene normal: 19,25,39,43,46,56,73,78,85,88,114,120,122,123,132,135,137,161
1528 rpsE_gene flipped: 57,150
1528 rpsE_gene normal: 74,117,153
1529 rpsE_gene flipped: 32,100,130,160
1529 rpsE_gene normal: 84
πΈ Sticky loop 1516-1519 (4) with 19 candidates
1516 rpsE_gene flipped: 32,100,130,160
1516 rpsE_gene normal: 84
1517 rpsE_gene flipped: 31,33,95
1518 rpsE_gene flipped: 25,39,46,56,85,88,114,120,123,137,161
============================================================
π JOURNEY SUMMARY:
π Bridge structures (stem pairs): 105
π Terminal stations (loops): 204
ποΈ Longest bridge: 12 base pairs
π Largest terminal: 13 nucleotides
π― POTENTIAL BINDING HOTSPOTS:
π Look for terminals >10 nt (protein landing zones)
π Check bulges 1-3 nt (fine-tuning sites)
π Monitor bridge intersections (assembly checkpoints)Free Open Source
Download the genetic rhythm analyzer, a Python program using the codon mapping model.
Rendered with Quarto from a template generated by the analyzer.
Include your own metadata and translations. Tune this discordant rough draft of the notes, the grammar, the science. Find more fidelity in Gaiaβs symphony.